View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2923_low_6 (Length: 542)

Name: NF2923_low_6
Description: NF2923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2923_low_6
NF2923_low_6
[»] chr2 (2 HSPs)
chr2 (15-534)||(41070553-41071065)
chr2 (262-332)||(36904034-36904104)
[»] chr7 (2 HSPs)
chr7 (262-345)||(48488394-48488477)
chr7 (292-345)||(28514697-28514750)
[»] chr5 (2 HSPs)
chr5 (260-332)||(564896-564968)
chr5 (287-345)||(34338964-34339022)
[»] chr8 (2 HSPs)
chr8 (380-431)||(13018449-13018500)
chr8 (262-332)||(13079268-13079338)
[»] chr4 (2 HSPs)
chr4 (260-357)||(55969842-55969938)
chr4 (380-424)||(3121026-3121070)
[»] chr1 (2 HSPs)
chr1 (253-310)||(4044943-4045000)
chr1 (292-356)||(3831387-3831451)


Alignment Details
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 15 - 534
Target Start/End: Original strand, 41070553 - 41071065
Alignment:
Q  15 caaattcaacacctctaaccaataaatatacttgctcatgctcttgccagaccaactcacttgtgccccacgttagtttttgacatatacttcatctctt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41070553 caaattcaacacctctaaccaataaatatacttgctcatgctcttgccagaccaactcacttgtgccccacgttagtttttgacatatacttcatctctt 41070652  T
Q  115 tccccttatttccctcgtgtctaatgagtgaattatattggctatagatattagattgtgatccttagtttatgaaggagaccatttnnnnnnntattgg 214  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||    
T  41070653 tccccttatttccctcctgtctaatgagtgaattatattggctatagatattagattgtgatccttagtttatgaaggagaccatttaaaaaaatattgg 41070752  T
Q  215 gtgcgtgcgtttgttttaacnnnnnnncactttcgattaaaatatgaaaaatgctaacaagtgtatttatgatattttttaagcatctaaaattagcgac 314  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||  |||||      |    
T  41070753 gtgcgtgcgtttgttttaac-aaaaaacactttcgattaaaatatgaaaaatgttaacaagtgcatttataatattttttaagcattcaaaat------c 41070845  T
Q  315 gtttgcattggaaattgtggagttataactttagcatgtgtttctaagacaaannnnnnnnaataggttccttgaacaatgcgcttaggacacttgttac 414  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||         |||||||||||| |||||||| ||| ||||||||||||     
T  41070846 gtttgcattggaaattgtggagttataactttaacatgtgtttctaagacaatttttttttaataggttccttaaacaatgcacttgggacacttgttag 41070945  T
Q  415 caaaacctttaaaatatttagacattttattttagagaatcgaaactaaaactagcacactcgaagtctcaagtcaacatcactaaaccaactcaactat 514  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  41070946 caaaacctttaaaatatttagacattttattttagagaatcgaaactaaaactagcacactcgaagtctcaagtcaacatcactaaaccaactcaaatat 41071045  T
Q  515 aaaattactacattcatctc 534  Q
    | ||||||||||||||||||    
T  41071046 agaattactacattcatctc 41071065  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 262 - 332
Target Start/End: Complemental strand, 36904104 - 36904034
Alignment:
Q  262 aaaatgctaacaagtgtatttatgatattttttaagcatctaaaattagcgacgtttgcattggaaattgt 332  Q
    |||||||||||||||||  | | |  ||| ||||||||||||||| |||| || |||||||||||||||||    
T  36904104 aaaatgctaacaagtgtcctaagggcattgtttaagcatctaaaagtagcaacttttgcattggaaattgt 36904034  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 262 - 345
Target Start/End: Original strand, 48488394 - 48488477
Alignment:
Q  262 aaaatgctaacaagtgtatttatgatattttttaagcatctaaaattagcgacgtttgcattggaaattgtggagttataactt 345  Q
    ||||||||||||||||  || | | |||| ||||||||||||||| |||| || |||||||||||||||||   ||||||||||    
T  48488394 aaaatgctaacaagtggcttaagggtattgtttaagcatctaaaagtagcaacttttgcattggaaattgtacggttataactt 48488477  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 345
Target Start/End: Complemental strand, 28514750 - 28514697
Alignment:
Q  292 tttaagcatctaaaattagcgacgtttgcattggaaattgtggagttataactt 345  Q
    ||||||||||||||| |||| || |||||||||||||||||   ||||||||||    
T  28514750 tttaagcatctaaaagtagcaacttttgcattggaaattgtacggttataactt 28514697  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 564896 - 564968
Alignment:
Q  260 gaaaaatgctaacaagtgtatttatgatattttttaagcatctaaaattagcgacgtttgcattggaaattgt 332  Q
    ||||||||||||||| |||  ||| || ||| ||||||||||||||| |||  || |||||||||||||||||    
T  564896 gaaaaatgctaacaaatgtccttaggacattgtttaagcatctaaaaatagtaacttttgcattggaaattgt 564968  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 287 - 345
Target Start/End: Complemental strand, 34339022 - 34338964
Alignment:
Q  287 tattttttaagcatctaaaattagcgacgtttgcattggaaattgtggagttataactt 345  Q
    |||| ||||||||||||||| |||| || ||||||||||||| ||||  ||||||||||    
T  34339022 tattgtttaagcatctaaaaatagcaacttttgcattggaaagtgtgtggttataactt 34338964  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 431
Target Start/End: Complemental strand, 13018500 - 13018449
Alignment:
Q  380 ggttccttgaacaatgcgcttaggacacttgttaccaaaacctttaaaatat 431  Q
    |||||||| |||||||| |||||||||||||||| ||| ||| |||||||||    
T  13018500 ggttccttaaacaatgcccttaggacacttgttaacaagacccttaaaatat 13018449  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 262 - 332
Target Start/End: Original strand, 13079268 - 13079338
Alignment:
Q  262 aaaatgctaacaagtgtatttatgatattttttaagcatctaaaattagcgacgtttgcattggaaattgt 332  Q
    |||||||||||| |||| |||| |||||| ||||||||||||||| |||  || ||| ||| |||||||||    
T  13079268 aaaatgctaacaggtgtttttaagatattgtttaagcatctaaaagtagtaacttttacataggaaattgt 13079338  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 357
Target Start/End: Original strand, 55969842 - 55969938
Alignment:
Q  260 gaaaaatgctaacaagtgtatttatgatattttttaagcatctaaaattagcgacgtttgcattggaaattgtggagttataactttagcatgtgttt 357  Q
    ||||||||||||||||||| || | | |||| ||||||||| ||||| |||| || ||||||||  ||||||| | ||| | |||||| |||||||||    
T  55969842 gaaaaatgctaacaagtgt-ttaagggtattgtttaagcatataaaaatagcaacttttgcattaaaaattgtagggttgtgactttaacatgtgttt 55969938  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 380 - 424
Target Start/End: Complemental strand, 3121070 - 3121026
Alignment:
Q  380 ggttccttgaacaatgcgcttaggacacttgttaccaaaaccttt 424  Q
    |||||||| |||||||| |||||||||||||||| ||| ||||||    
T  3121070 ggttccttaaacaatgctcttaggacacttgttaacaacaccttt 3121026  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 4045000 - 4044943
Alignment:
Q  253 aaaatatgaaaaatgctaacaagtgtatttatgatattttttaagcatctaaaattag 310  Q
    ||||||||||||||||||| |||| | |||| || ||| |||||||||||| ||||||    
T  4045000 aaaatatgaaaaatgctaataagtatctttaggacattgtttaagcatctataattag 4044943  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 292 - 356
Target Start/End: Original strand, 3831387 - 3831451
Alignment:
Q  292 tttaagcatctaaaattagcgacgtttgcattggaaattgtggagttataactttagcatgtgtt 356  Q
    ||||||||||||||| |||  |  |||||||||||||||||  |||||| |||||| ||||||||    
T  3831387 tttaagcatctaaaagtagaaatttttgcattggaaattgtacagttatgactttaacatgtgtt 3831451  T

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