View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2924_high_5 (Length: 250)

Name: NF2924_high_5
Description: NF2924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2924_high_5
NF2924_high_5
[»] chr1 (8 HSPs)
chr1 (12-228)||(9092271-9092487)
chr1 (12-229)||(2222756-2222973)
chr1 (1-228)||(40776107-40776329)
chr1 (12-225)||(4812087-4812298)
chr1 (51-228)||(8829466-8829643)
chr1 (7-149)||(12158828-12158970)
chr1 (154-228)||(5368957-5369031)
chr1 (1-55)||(8829680-8829734)
[»] chr8 (10 HSPs)
chr8 (12-227)||(12358002-12358217)
chr8 (12-227)||(12359130-12359345)
chr8 (12-228)||(30804529-30804745)
chr8 (1-168)||(10349356-10349523)
chr8 (56-228)||(23265807-23265971)
chr8 (92-220)||(17702700-17702828)
chr8 (27-220)||(34139773-34139966)
chr8 (161-228)||(26513973-26514040)
chr8 (186-229)||(10349523-10349566)
chr8 (95-151)||(26513631-26513688)
[»] chr7 (13 HSPs)
chr7 (1-228)||(23311831-23312058)
chr7 (13-228)||(7416735-7416950)
chr7 (12-228)||(1362790-1363006)
chr7 (12-228)||(3393109-3393326)
chr7 (12-228)||(18113721-18113934)
chr7 (1-182)||(49014905-49015076)
chr7 (18-171)||(8056167-8056320)
chr7 (13-161)||(29189161-29189309)
chr7 (108-220)||(30404284-30404396)
chr7 (25-142)||(27687866-27687986)
chr7 (94-136)||(38287624-38287666)
chr7 (195-228)||(29189132-29189165)
chr7 (160-220)||(36891996-36892056)
[»] chr4 (18 HSPs)
chr4 (1-228)||(21637777-21638006)
chr4 (12-228)||(4400591-4400807)
chr4 (7-228)||(27982013-27982233)
chr4 (94-228)||(49069409-49069543)
chr4 (7-131)||(11891820-11891943)
chr4 (7-131)||(11892566-11892689)
chr4 (46-224)||(44121695-44121877)
chr4 (108-228)||(5409447-5409567)
chr4 (93-222)||(22492889-22493018)
chr4 (77-150)||(48006187-48006260)
chr4 (1-108)||(49069292-49069401)
chr4 (1-99)||(21058947-21059046)
chr4 (161-230)||(21059103-21059172)
chr4 (161-228)||(11891926-11891993)
chr4 (12-106)||(36561662-36561756)
chr4 (27-182)||(3691293-3691444)
chr4 (161-224)||(11892672-11892735)
chr4 (97-203)||(24016610-24016716)
[»] scaffold0007 (1 HSPs)
scaffold0007 (8-228)||(180907-181126)
[»] chr2 (9 HSPs)
chr2 (19-228)||(15880565-15880774)
chr2 (27-228)||(13289604-13289805)
chr2 (12-228)||(37134075-37134290)
chr2 (13-228)||(43214690-43214906)
chr2 (32-228)||(25933699-25933895)
chr2 (8-152)||(40497244-40497388)
chr2 (113-220)||(33737740-33737847)
chr2 (31-131)||(33741862-33741964)
chr2 (161-218)||(16219184-16219241)
[»] scaffold0240 (1 HSPs)
scaffold0240 (7-228)||(10718-10939)
[»] chr5 (11 HSPs)
chr5 (17-228)||(41472398-41472611)
chr5 (65-226)||(12190557-12190717)
chr5 (54-225)||(31036784-31036954)
chr5 (157-228)||(17916617-17916688)
chr5 (92-228)||(35618274-35618406)
chr5 (27-173)||(19321510-19321658)
chr5 (163-228)||(42454869-42454934)
chr5 (154-220)||(19102001-19102067)
chr5 (154-220)||(21317406-21317472)
chr5 (93-142)||(10153833-10153882)
chr5 (18-79)||(36785128-36785191)
[»] chr3 (12 HSPs)
chr3 (8-228)||(53165287-53165507)
chr3 (78-228)||(30226641-30226791)
chr3 (18-217)||(7754196-7754399)
chr3 (7-193)||(5271586-5271774)
chr3 (76-228)||(3983851-3984003)
chr3 (70-228)||(15769091-15769248)
chr3 (93-220)||(1553726-1553853)
chr3 (7-92)||(30226536-30226622)
chr3 (102-182)||(47118177-47118257)
chr3 (114-182)||(29715868-29715936)
chr3 (12-44)||(15769050-15769082)
chr3 (114-182)||(21382155-21382223)
[»] chr6 (5 HSPs)
chr6 (18-228)||(26560929-26561129)
chr6 (167-220)||(2423031-2423084)
chr6 (7-44)||(9421116-9421153)
chr6 (12-169)||(30008534-30008692)
chr6 (195-227)||(32652660-32652692)
[»] scaffold0238 (1 HSPs)
scaffold0238 (154-219)||(14799-14866)


Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 9092487 - 9092271
Alignment:
Q  12 aaaaacaattatccaatacttttcagatacatccggaatacgagggataggcggtggaaaaccgatatgtgtgggctacctgatgtttctattatatttg 111  Q
    |||||||||||||  ||||||||||||| |||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9092487 aaaaacaattatctgatacttttcagatgcatctgagatacgagggataggcggtggaaaaccgatatgtgtgggctacctgatgtttctattatatttg 9092388  T
Q  112 gtatatatgtaattgactaagtaatgatgttttctatttaaaatatatcatatatgtaattgactaattgttgttttctttactatcaatattatttaca 211  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||| | |||||||| ||||||||||| |||||    
T  9092387 gtatatatgtaattgactaggtaatgatgttttctatttagaatatatcatatatgtaatttactaattgtcgatttctttattatcaatattacttaca 9092288  T
Q  212 tttatatttctattgtt 228  Q
    |||||||||||||||||    
T  9092287 tttatatttctattgtt 9092271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 12 - 229
Target Start/End: Complemental strand, 2222973 - 2222756
Alignment:
Q  12 aaaaacaattatccaatacttttcagatacatccggaatacgagggataggcggtggaaaaccgatatgtgtgggctacctgatgtttctattatatttg 111  Q
    ||||| |||||||| ||| |||||||||||||| || ||||||||| ||||||||||||||| |||||||| |||||||||| |||||||||||||||||    
T  2222973 aaaaaaaattatccgatatttttcagatacatctgggatacgaggggtaggcggtggaaaactgatatgtgcgggctacctggtgtttctattatatttg 2222874  T
Q  112 gtatatatgtaattgactaagtaatgatgttttctatttaaaatatatcatatatgtaattgactaattgttgttttctttactatcaatattatttaca 211  Q
    ||||| ||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||| ||||||| | |||||||| ||||||||||| |||||    
T  2222873 gtataaatgtaattgactaagtaattatgttttctatttaggatatatcatatatgtaattgattaattgtcgctttctttattatcaatattagttaca 2222774  T
Q  212 tttatatttctattgttt 229  Q
    ||||||||| | ||||||    
T  2222773 tttatatttttgttgttt 2222756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 40776107 - 40776329
Alignment:
Q  1 ttattctttttaaaaacaattatccaatacttttcagatacatccggaatacgagggataggcggtggaaaaccgatatgtgtgggctacctgatgtttc 100  Q
    ||||| |||| |||||||||||||| ||||||||| |||||||| || |||||||||||||| ||||||||||| |||| || |||||||||||||||||    
T  40776107 ttatttttttaaaaaacaattatccgatacttttctgatacatctgggatacgagggataggtggtggaaaaccaatatatgcgggctacctgatgtttc 40776206  T
Q  101 tattatatttggtatatatgtaattgactaagtaatgatgttttctatttaaaatatatcatatatgtaattgactaattgttgttttctttactatcaa 200  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||||  ||||||||||||||||||||||||||| | | |||||    ||||||    
T  40776207 tattatatttggtatatatgtaattgactaagtaatgatg-tctctatttaggatatatcatatatgtaattgactaattttcgctttct----tatcaa 40776301  T
Q  201 tattatttacatttatatttctattgtt 228  Q
    ||| | ||||||||||||||||||||||    
T  40776302 tatcacttacatttatatttctattgtt 40776329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 12 - 225
Target Start/End: Original strand, 4812087 - 4812298
Alignment:
Q  12 aaaaacaattatccaatacttttcagatacatccggaatacgagggataggcggtggaaaaccgatatgtgtgggctacctgatgtttctattatatttg 111  Q
    |||||||||||||||||||||||| |||| ||| || ||||||  |||||| |||||||||| |||||||| || ||||||||| ||||||||||||||     
T  4812087 aaaaacaattatccaatacttttc-gatatatctgggatacgaacgataggaggtggaaaacagatatgtgcggactacctgatatttctattatattta 4812185  T
Q  112 gtatatatgtaattgactaagtaatgatgttttctatttaaaatatatcatatatgtaattgactaattgttgttttctttactatcaatattatttaca 211  Q
    |||||||||||||||||||||||||||||||||| |||||  |  ||| |||||||||||| ||||||||| | |||||||| ||||||||||| |||||    
T  4812186 gtatatatgtaattgactaagtaatgatgttttcaatttatga-gtattatatatgtaattaactaattgtcgctttctttattatcaatattacttaca 4812284  T
Q  212 tttatatttctatt 225  Q
    ||||||||||||||    
T  4812285 tttatatttctatt 4812298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 51 - 228
Target Start/End: Complemental strand, 8829643 - 8829466
Alignment:
Q  51 acgagggataggcggtggaaaaccgatatgtgtgggctacctgatgtttctattatatttggtatatatgtaattgactaagtaatgatgttttctattt 150  Q
    ||||| ||||||| ||| ||| |||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||  |||| |||||||    
T  8829643 acgagtgataggcagtgaaaatccgatatgtgcgggctacctgacatttctattatatttggtatatatgtaattgactaagtaattgtgttctctattt 8829544  T
Q  151 aaaatatatcatatatgtaattgactaattgttgttttctttactatcaatattatttacatttatatttctattgtt 228  Q
    |  ||||||||||||||||||||||||||||| | |||||||| ||||||||||| ||||||||||||||||||||||    
T  8829543 aggatatatcatatatgtaattgactaattgtcgctttctttattatcaatattacttacatttatatttctattgtt 8829466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 12158828 - 12158970
Alignment:
Q  7 tttttaaaaacaattatccaatacttttcagatacatccggaatacgagggataggcggtggaaaaccgatatgtgtgggctacctgatgtttctattat 106  Q
    |||| |||||||||||||| |||||||||||||||||| || |||| || || |  || |||||||| ||||||||  ||||||||||||||||||||||    
T  12158828 ttttaaaaaacaattatccgatacttttcagatacatcagggatactagcgacaaacgatggaaaactgatatgtgcaggctacctgatgtttctattat 12158927  T
Q  107 atttggtatatatgtaattgactaagtaatgatgttttctatt 149  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  12158928 atttggtatatatgtaattgactaagtaatgatgttttctatt 12158970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 5368957 - 5369031
Alignment:
Q  154 atatatcatatatgtaattgactaattgttgttttctttactatcaatattatttacatttatatttctattgtt 228  Q
    |||||||||||| ||||||| |||| | || ||||||||| |||||||||| |||| ||||||||||||||||||    
T  5368957 atatatcatatacgtaattgtctaactattattttctttattatcaatattgtttatatttatatttctattgtt 5369031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 8829734 - 8829680
Alignment:
Q  1 ttattctttttaaaaacaattatccaatacttttcagatacatccggaatacgag 55  Q
    ||||| |||| |||||||||||||| |||||||||||||||||| || |||||||    
T  8829734 ttatttttttaaaaaacaattatccgatacttttcagatacatctgggatacgag 8829680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 12 - 227
Target Start/End: Original strand, 12358002 - 12358217
Alignment:
Q  12 aaaaacaattatccaatacttttcagatacatccggaatacgagggataggcggtggaaaaccgatatgtgtgggctacctgatgtttctattatatttg 111  Q
    |||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||| ||||  ||||| |||||||||||||||||||||    
T  12358002 aaaaacaattatccgatacttttcagatacatctgggatacgagggataggcggtggaaaaccgatctgtgcaggctagctgatgtttctattatatttg 12358101  T
Q  112 gtatatatgtaattgactaagtaatgatgttttctatttaaaatatatcatatatgtaattgactaattgttgttttctttactatcaatattatttaca 211  Q
    |||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||| | |||||||| |||||| |||| |||||    
T  12358102 gtatatatgtaattgacttagtaacgatgttttctatttagaatatatcatatatgtaattgactaattgtcgctttctttattatcaacattacttaca 12358201  T
Q  212 tttatatttctattgt 227  Q
    ||||||||||||||||    
T  12358202 tttatatttctattgt 12358217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 12 - 227
Target Start/End: Original strand, 12359130 - 12359345
Alignment:
Q  12 aaaaacaattatccaatacttttcagatacatccggaatacgagggataggcggtggaaaaccgatatgtgtgggctacctgatgtttctattatatttg 111  Q
    |||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||| ||||  ||||| |||||||||||||||||||||    
T  12359130 aaaaacaattatccgatacttttcagatacatctgggatacgagggataggcggtggaaaaccgatctgtgcaggctagctgatgtttctattatatttg 12359229  T
Q  112 gtatatatgtaattgactaagtaatgatgttttctatttaaaatatatcatatatgtaattgactaattgttgttttctttactatcaatattatttaca 211  Q
    |||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||| | |||||||| |||||| |||| |||||    
T  12359230 gtatatatgtaattgacttagtaacgatgttttctatttagaatatatcatatatgtaattgactaattgtcgctttctttattatcaacattacttaca 12359329  T
Q  212 tttatatttctattgt 227  Q
    ||||||||||||||||    
T  12359330 tttatatttctattgt 12359345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 30804745 - 30804529
Alignment:
Q  12 aaaaacaattatccaatacttttcagatacatccggaatacgagggataggcggtggaaaaccgatatgtgtgggctacctgatgtttctattatatttg 111  Q
    ||||| |||||||  |||||||||||||||||| |  ||||||| | ||||| |||||||||| | ||||| ||||||||||||| ||||| | ||||||    
T  30804745 aaaaataattatctgatacttttcagatacatctgagatacgagaggtaggcagtggaaaaccaaaatgtgcgggctacctgatgattctactgtatttg 30804646  T
Q  112 gtatatatgtaattgactaagtaatgatgttttctatttaaaatatatcatatatgtaattgactaattgttgttttctttactatcaatattatttaca 211  Q
    |||||||| ||||||||||||||| ||||| |||| ||||  ||||||||||||||||||||||||||||| | |||||||| ||||||||||| |||||    
T  30804645 gtatatatttaattgactaagtaacgatgtattctttttaggatatatcatatatgtaattgactaattgtcgctttctttattatcaatattacttaca 30804546  T
Q  212 tttatatttctattgtt 228  Q
    |||||||||||||||||    
T  30804545 tttatatttctattgtt 30804529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 10349356 - 10349523
Alignment:
Q  1 ttattctttttaaaaacaattatccaatacttttcagatacatccggaatacgagggataggcggtggaaaaccgatatgtgtgggctacctgatgtttc 100  Q
    ||||| |||| ||||||||||||||||||||||||| | ||||| || |||||||| ||||||||||||||| |||| |||| ||||| |||||||||||    
T  10349356 ttatttttttaaaaaacaattatccaatacttttcaaaaacatctgggatacgaggaataggcggtggaaaatcgatctgtgcgggctgcctgatgtttc 10349455  T
Q  101 tattatatttggtatatatgtaattgactaagtaatgatgttttctatttaaaatatatcatatatgt 168  Q
    ||||||||||||||||||| ||||||||||| |||||||| ||| ||||||  |||||||||||||||    
T  10349456 tattatatttggtatatatataattgactaaataatgatgctttttatttaggatatatcatatatgt 10349523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 56 - 228
Target Start/End: Original strand, 23265807 - 23265971
Alignment:
Q  56 ggataggcggtggaaaaccgatatgtgtgggctacctgatgtttctattatatttggtatatatgtaattgactaagtaatgatgttttctatttaaaat 155  Q
    ||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||        |||||||||||||| ||||||||||||||  ||    
T  23265807 ggataggcggtggaaaaccgatatgtgcgagttacctgatgtttctattatatttggta--------attgactaagtaataatgttttctatttatgat 23265898  T
Q  156 atatcatatatgtaattgactaattgttgttttctttactatcaatattatttacatttatatttctattgtt 228  Q
    |||||||||||||| |||||||||||| | |||||||| | ||||||||| ||| |||| |||||||||||||    
T  23265899 atatcatatatgtagttgactaattgtcgctttctttattgtcaatattaattatatttgtatttctattgtt 23265971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 92 - 220
Target Start/End: Original strand, 17702700 - 17702828
Alignment:
Q  92 tgatgtttctattatatttggtatatatgtaattgactaagtaatgatgttttctatttaaaatatatcatatatgtaattgactaattgttgttttctt 191  Q
    |||||||||||||||  |||| ||||||||||||||||| |||||  |||| ||| |||   ||||||||||||||||||||||||| |||  |||||||    
T  17702700 tgatgtttctattattgttgggatatatgtaattgactaggtaatagtgttatcttttttggatatatcatatatgtaattgactaaatgtcattttctt 17702799  T
Q  192 tactatcaatattatttacatttatattt 220  Q
    || |||||||||| |||| | ||||||||    
T  17702800 tattatcaatattgtttataattatattt 17702828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 220
Target Start/End: Original strand, 34139773 - 34139966
Alignment:
Q  27 atacttttcagatacatccggaatacgaggg--ataggcggtggaaaaccgatatgtgtgggctacctgatgtttctattatatttggtatatatgtaat 124  Q
    |||||||||||||||||| || ||||| |||  || | |||||||||| ||||| ||| ||  ||| ||||||||||||||| ||||  |||||||||||    
T  34139773 atacttttcagatacatcggggatacgtgggcgattgacggtggaaaatcgatacgtgcgga-tacatgatgtttctattat-tttgagatatatgtaat 34139870  T
Q  125 tgactaagtaatgatgttttctatttaaaatatatcatatatgtaattgactaattgttgttttctttactatcaatattatttacatttatattt 220  Q
    |||||  |||||| |||||||| |||   |||||||| |||||||||||| | |||||   ||| |||| ||||||||||| ||| ||||||||||    
T  34139871 tgactcggtaatggtgttttctttttgggatatatcacatatgtaattgaatgattgtcactttatttattatcaatattacttatatttatattt 34139966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 26513973 - 26514040
Alignment:
Q  161 atatatgtaattgactaattgttgttttctttactatcaatattatttacatttatatttctattgtt 228  Q
    |||||||||| ||| ||||||| | |||||||| ||||||||||| ||||||||||||||||||||||    
T  26513973 atatatgtaagtgattaattgtcgctttctttattatcaatattacttacatttatatttctattgtt 26514040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 229
Target Start/End: Original strand, 10349523 - 10349566
Alignment:
Q  186 tttctttactatcaatattatttacatttatatttctattgttt 229  Q
    |||||||| ||||||||||| |||||||||||||||||||||||    
T  10349523 tttctttattatcaatattacttacatttatatttctattgttt 10349566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 26513631 - 26513688
Alignment:
Q  95 tgtttctattatatttggtatatatgtaatt-gactaagtaatgatgttttctattta 151  Q
    ||||||||||||||||||||||||| ||||| |||||||||| |||| ||| ||||||    
T  26513631 tgtttctattatatttggtatatatataattggactaagtaacgatgatttttattta 26513688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 156; Significance: 5e-83; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 23311831 - 23312058
Alignment:
Q  1 ttattctttttaaaaacaattatccaatacttttcagatacatccggaatacgagggataggcggtggaaaaccgatatgtgtgggctacctgatgtttc 100  Q
    ||||| |||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||  |||| | |||||||||    
T  23311831 ttattttttttaaaaacaattatctaatacttttcagatacatctgggatacgagggataggcggtggaaaaccgatatgtgcaggctgcttgatgtttc 23311930  T
Q  101 tattatatttggtatatatgtaattgactaagtaatgatgttttctatttaaaatatatcatatatgtaattgactaattgttgttttctttactatcaa 200  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||| | |||||||| ||||||    
T  23311931 tattatattttgtatatatgtaattgactaagtaatgatgttttctatttatgatatatcatatatgtagttgactaattgtcgctttctttattatcaa 23312030  T
Q  201 tattatttacatttatatttctattgtt 228  Q
    ||||| ||||||| |||||| |||||||    
T  23312031 tattacttacattcatatttatattgtt 23312058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 13 - 228
Target Start/End: Original strand, 7416735 - 7416950
Alignment:
Q  13 aaaacaattatccaatacttttcagatacatccggaatacgagggataggcggtggaaaaccgatatgtgtgggctacctgatgtttctattatatttgg 112  Q
    ||||||||||||  |||||||| ||||||||| || ||||||| |||||||||||||||||||| |||||  ||||||||||||||| ||||||||||||    
T  7416735 aaaacaattatctgatactttttagatacatctgggatacgagcgataggcggtggaaaaccgagatgtgcaggctacctgatgtttttattatatttgg 7416834  T
Q  113 tatatatgtaattgactaagtaatgatgttttctatttaaaatatatcatatatgtaattgactaattgttgttttctttactatcaatattatttacat 212  Q
    ||||| |||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||    
T  7416835 tatatttgtaattgactaagtaattatgttttctatttaggatatatcatatatgtaattgactaattgttgctttctttattatcaatattacttacat 7416934  T
Q  213 ttatatttctattgtt 228  Q
    |||||| |||||||||    
T  7416935 ttatatctctattgtt 7416950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 1363006 - 1362790
Alignment:
Q  12 aaaaacaattatccaatacttttcagatacatccggaatacgagggataggcggtggaaaaccgatatgtgtgggctacctgatgtttctattatatttg 111  Q
    |||||||||||| | |||||||||||||||||| || ||| ||| |||||| |||||||||| |||||||| |||||||||||||||||||| |||||||    
T  1363006 aaaaacaattatgcgatacttttcagatacatctgggataagagcgataggaggtggaaaactgatatgtgcgggctacctgatgtttctatcatatttg 1362907  T
Q  112 gtatatatgtaattgactaagtaatgatgttttctatttaaaatatatcatatatgtaattgactaattgttgttttctttactatcaatattatttaca 211  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||| | | |||||||| ||| ||||||| |||||    
T  1362906 gtatatatgtaattgactaagtaatgatgttttctatttaggatatatcacatatgtaattgactaattttcgctttctttattattaatattagttaca 1362807  T
Q  212 tttatatttctattgtt 228  Q
    |||||||||||||||||    
T  1362806 tttatatttctattgtt 1362790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 3393109 - 3393326
Alignment:
Q  12 aaaaacaattatccaatacttttcagatacatccggaatacgagggataggcggtggaaaaccgatatgtgtgggctacctgatgtttctattatatttg 111  Q
    |||||||||||||| ||| ||| |||||||||| || |||||| |||||| |||||||||| ||||||||| | | || |||||||||||||||||||||    
T  3393109 aaaaacaattatccgatattttccagatacatctgggatacgaaggatagacggtggaaaatcgatatgtgcgagttatctgatgtttctattatatttg 3393208  T
Q  112 gtatatatgtaattgactaagtaatgatgtt-ttctatttaaaatatatcatatatgtaattgactaattgttgttttctttactatcaatattatttac 210  Q
    ||||||||||||||||||||||||||||||| || ||||||  |||||| |||||||||||||||||||||| | |||||||| ||||||| ||| ||||    
T  3393209 gtatatatgtaattgactaagtaatgatgttcttttatttaggatatattatatatgtaattgactaattgtcgctttctttattatcaatcttacttac 3393308  T
Q  211 atttatatttctattgtt 228  Q
    ||||||||||||||||||    
T  3393309 atttatatttctattgtt 3393326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 18113934 - 18113721
Alignment:
Q  12 aaaaacaattatccaatacttttcagatacatccggaatacgagggataggcggtggaaaaccgatatgtgtgggctacctgatgtttctattatatttg 111  Q
    ||||| || ||||| |||||||||| ||||||| ||| ||| ||||||| |||||| ||||| |||||||| |||||||||||||||| |||||||||||    
T  18113934 aaaaataagtatccgatacttttcaaatacatctgga-tacaagggataagcggtgaaaaactgatatgtgagggctacctgatgtttatattatatttg 18113836  T
Q  112 gtatatatgtaattgactaagtaatgatgttttctatttaaaatatatcatatatgtaattgactaattgttgttttctttactatcaatattatttaca 211  Q
    || ||| ||  |||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||| | |||||||| ||| |||||||||||||    
T  18113835 gtttatgtg--attgactaagtaatgaggttttctatttaggatatatcatatatgtaattgactaattgtcgctttctttattataaatattatttaca 18113738  T
Q  212 tttatatttctattgtt 228  Q
    |||||||| ||||||||    
T  18113737 tttatattactattgtt 18113721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 49015076 - 49014905
Alignment:
Q  1 ttattctttttaaaaacaattatccaatacttttcagatacatccggaatacgagggataggcggtggaaaaccgatatgtgtgggctacctgatgt-tt 99  Q
    ||||| ||||||||||||||||||| |||||||||| ||||||  || ||| ||| ||||||||||||||||||||||           | |||||| ||    
T  49015076 ttattttttttaaaaacaattatccgatacttttcaaatacatttgggatatgagcgataggcggtggaaaaccgata-----------catgatgtgtt 49014988  T
Q  100 ctattatatttggtatatatgtaattgactaagtaatgatgttttctatttaaaatatatcatatatgtaattgactaattgt 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||    
T  49014987 ctattatatttggtatatatgtaattgactaagtaatgatgttttatatttaggatatatcatatatgtaattgactaattgt 49014905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 8056320 - 8056167
Alignment:
Q  18 aattatccaatacttttcagatacatccggaatacgagggataggcggtggaaaaccgatatgtgtgggctacctgatgtttctattatatttggtatat 117  Q
    |||||||| |||||||||| ||||||   | |||||||||||| ||| ||||||||| |||||||   ||||||||||||||||||||||||||||||||    
T  8056320 aattatccgatacttttcatatacatttaggatacgagggataagcgatggaaaaccaatatgtgcaagctacctgatgtttctattatatttggtatat 8056221  T
Q  118 atgtaattgactaagtaatgatgttttctatttaaaatatatcatatatgtaat 171  Q
     |||||||||||||| ||||||||||| ||||||  ||||||||||||||||||    
T  8056220 ttgtaattgactaagcaatgatgttttttatttatgatatatcatatatgtaat 8056167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 29189309 - 29189161
Alignment:
Q  13 aaaacaattatccaatacttttcagatacatccggaatacgagggataggcggtggaaaaccgatatgtgtgggctacctgatgtttctattatatttgg 112  Q
    |||| |||||||| |||||||| ||||||||| || ||||||| |||| |||||||||||| |||||||| |||||||| ||| ||||||||||||||||    
T  29189309 aaaataattatccgatacttttaagatacatctgggatacgagcgatatgcggtggaaaactgatatgtgcgggctaccagatatttctattatatttgg 29189210  T
Q  113 tatatatgtaattgactaagtaatgatgttttctatttaaaatatatca 161  Q
    || | ||||||||||||| |||||||| |||| ||||||  ||||||||    
T  29189209 tacacatgtaattgactacgtaatgatattttttatttaggatatatca 29189161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 108 - 220
Target Start/End: Original strand, 30404284 - 30404396
Alignment:
Q  108 tttggtatatatgtaattgactaagtaatgatgttttctatttaaaatatatcatatatgtaattgactaattgttgttttctttactatcaatattatt 207  Q
    ||||| |||||| |||||||||||  ||| ||||  ||  ||| ||||||||||||||| |||||||||||||||| ||||||||| ||||||||||| |    
T  30404284 tttgggatatatataattgactaatcaataatgtactcgtttttaaatatatcatatatataattgactaattgtttttttctttattatcaatattact 30404383  T
Q  208 tacatttatattt 220  Q
    |  ||||||||||    
T  30404384 tgtatttatattt 30404396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 142
Target Start/End: Complemental strand, 27687986 - 27687866
Alignment:
Q  25 caatacttttcagatacatccggaatac--gagggataggcggtggaaaaccgatatgtgtgggctacctgatgtttc-tattatatttggtatatatgt 121  Q
    |||||||||||||||||||| || ||||  ||||||||||||| ||||||||| || | |||   ||| ||||||||  |||||| ||||| ||||||||    
T  27687986 caatacttttcagatacatcggggatacacgagggataggcggaggaaaaccgttacgcgtgaaatacatgatgttttatattatttttgggatatatgt 27687887  T
Q  122 aattgactaagtaatgatgtt 142  Q
    |||||||||| ||||||||||    
T  27687886 aattgactaactaatgatgtt 27687866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 136
Target Start/End: Complemental strand, 38287666 - 38287624
Alignment:
Q  94 atgtttctattatatttggtatatatgtaattgactaagtaat 136  Q
    ||||||||||||| ||||  |||||||||||||||||||||||    
T  38287666 atgtttctattatttttgaaatatatgtaattgactaagtaat 38287624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 228
Target Start/End: Complemental strand, 29189165 - 29189132
Alignment:
Q  195 tatcaatattatttacatttatatttctattgtt 228  Q
    ||||||||||| ||||||||||||||||||||||    
T  29189165 tatcaatattacttacatttatatttctattgtt 29189132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 36891996 - 36892056
Alignment:
Q  160 catatatgtaattgactaattgttgttttctttactatcaatattatttacatttatattt 220  Q
    ||||||||||||||||||||||    ||| |||| ||||||||||| ||| ||||||||||    
T  36891996 catatatgtaattgactaattgacactttatttattatcaatattacttatatttatattt 36892056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 21637777 - 21638006
Alignment:
Q  1 ttattctttttaaaaacaattatccaatacttttcagatacatccggaatacgagggataggcggtggaaaaccgatatgtgtgggctacctgatgtttc 100  Q
    ||||| |||| |||||||||||||  |||||||||||||||||| || |||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  21637777 ttatttttttaaaaaacaattatctgatacttttcagatacatctgggatacgagggataggcggtggaaaaccgatatgtgcgtgctacctgatgtttc 21637876  T
Q  101 tattatatttgg--tatatatgtaattgactaagtaatgatgttttctatttaaaatatatcatatatgtaattgactaattgttgttttctttactatc 198  Q
    ||||||||||||  ||||||| |||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||| ||||    
T  21637877 tattatatttggtatatatatataattgactaagtaatgatgttttctatttaggatatatcatgtatgtaattgactaattgttgttttctttattatc 21637976  T
Q  199 aatattatttacatttatatttctattgtt 228  Q
    ||||||| ||||||| |||||  |||||||    
T  21637977 aatattacttacattaatattaatattgtt 21638006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 4400591 - 4400807
Alignment:
Q  12 aaaaacaattatccaatacttttcagatacatccggaatacgagggataggcggtggaaaaccgatatgtgtgggctacctgatgtttctattatatttg 111  Q
    ||||| |||||||| ||| |||||||||||||| || ||||||||||||||||||||||||   ||||||| |||||| |||||||||||||||||||||    
T  4400591 aaaaataattatccgataattttcagatacatctgggatacgagggataggcggtggaaaatatatatgtgcgggctatctgatgtttctattatatttg 4400690  T
Q  112 gtatatatgtaattgactaagtaatgatgttttctatttaaaatatatcatatatgtaattgactaattgttgttttctttactatcaatattatttaca 211  Q
     || ||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||   ||| |||| ||||||||||| |||||    
T  4400691 atacatatgtaattgactaagtaatgatgctttctatttaggatatatcatatatgtaattgactaattgtcactttatttattatcaatattacttaca 4400790  T
Q  212 tttatatttctattgtt 228  Q
    |||||||||||||||||    
T  4400791 tttatatttctattgtt 4400807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 27982013 - 27982233
Alignment:
Q  7 tttttaaaaacaattatccaatacttttcagatacatccggaatacgagggataggcggtggaaaaccgatatgtgtgggctacctgatgtttctattat 106  Q
    ||||||||||||| |||   |||||||||||||||||| |  ||||||| ||||| || ||||||| ||||||||| |||||||||||||||||||| ||    
T  27982013 tttttaaaaacaaatatatgatacttttcagatacatctgtgatacgagcgatagacgatggaaaatcgatatgtgcgggctacctgatgtttctat-at 27982111  T
Q  107 atttggtatatatgtaattgactaagtaatgatgttttctatttaaaatatatcatatatgtaattgactaattgttgttttctttactatcaatattat 206  Q
    |||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| | | |||||||| |||||||||||     
T  27982112 attttgtatatatgtaattgactaagtaatgatgttttctatttatgatatatcatatatgtaattgactaattatcgctttctttattatcaatattac 27982211  T
Q  207 ttacatttatatttctattgtt 228  Q
    ||||||||||||||||| ||||    
T  27982212 ttacatttatatttctactgtt 27982233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 94 - 228
Target Start/End: Original strand, 49069409 - 49069543
Alignment:
Q  94 atgtttctattatatttggtatatatgtaattgactaagtaatgatgttttctatttaaaatatatcatatatgtaattgactaattgttgttttcttta 193  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||| | ||||||||    
T  49069409 atgtttctattatatttggtatatatgtaattaactaagtaatgatgttttctatttaggatatatcatatatgtaattgactaattgtggctttcttta 49069508  T
Q  194 ctatcaatattatttacatttatatttctattgtt 228  Q
     ||||||||||| |||||||||||||| |||||||    
T  49069509 ttatcaatattacttacatttatatttatattgtt 49069543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 11891820 - 11891943
Alignment:
Q  7 tttttaaaaacaattatccaatacttttcagatacatccggaatacgagggataggcggtggaaaaccgatatgtgtgggctacctgatgtttctattat 106  Q
    ||||||||||||||||||| |||||||||||||||||| || ||||||| |||| | |||||||||| |||||||| |||||||||||||||||||||||    
T  11891820 tttttaaaaacaattatccgatacttttcagatacatctgggatacgagcgataag-ggtggaaaactgatatgtgcgggctacctgatgtttctattat 11891918  T
Q  107 atttggtatatatgtaattgactaa 131  Q
    |||||||||||||||||||||||||    
T  11891919 atttggtatatatgtaattgactaa 11891943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 11892566 - 11892689
Alignment:
Q  7 tttttaaaaacaattatccaatacttttcagatacatccggaatacgagggataggcggtggaaaaccgatatgtgtgggctacctgatgtttctattat 106  Q
    ||||||||||||||||||  |||||||||||||||||| || ||||||| |||| | ||||||||||||||||||| |||||||||||||||||||||||    
T  11892566 tttttaaaaacaattatctgatacttttcagatacatctgggatacgagcgataag-ggtggaaaaccgatatgtgcgggctacctgatgtttctattat 11892664  T
Q  107 atttggtatatatgtaattgactaa 131  Q
    |||||||||||||||||||||||||    
T  11892665 atttggtatatatgtaattgactaa 11892689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 46 - 224
Target Start/End: Complemental strand, 44121877 - 44121695
Alignment:
Q  46 ggaatacgagggataggcggtggaaaaccgatatgtgtgggctacctgatgtttctattatatttg----gtatatatgtaattgactaagtaatgatgt 141  Q
    |||||||||  ||||||||||||||| | |||||| | | ||||||||||||||||||||||||||     ||||||| |||||||||| ||||||||||    
T  44121877 ggaatacgaacgataggcggtggaaa-ctgatatgcgcgagctacctgatgtttctattatatttgatatatatatatataattgactaggtaatgatgt 44121779  T
Q  142 tttctatttaaaatatatcatatatgtaattgactaa-ttgttgttttctttactatcaatattatttacatttatatttctat 224  Q
    ||||||||||| |||||| |||||||||||||||||| |||| | |||||||| ||||||||||| |||||||||| |||||||    
T  44121778 tttctatttaagatatattatatatgtaattgactaatttgtcgctttctttattatcaatattacttacatttatgtttctat 44121695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 108 - 228
Target Start/End: Original strand, 5409447 - 5409567
Alignment:
Q  108 tttggtatatatgtaattgactaagtaatgatgttttctatttaaaatatatcatatatgtaattgactaattgttgttttctttactatcaatattatt 207  Q
    ||||||||||||| |||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||| | |||||||| || |||||||| |    
T  5409447 tttggtatatatgcaattgactaagtaatgatgttttctattaaggatatatcatatatgtaattgactaattgtcgctttctttattagcaatattact 5409546  T
Q  208 tacatttatatttctattgtt 228  Q
    |||||||||||||||||||||    
T  5409547 tacatttatatttctattgtt 5409567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 93 - 222
Target Start/End: Complemental strand, 22493018 - 22492889
Alignment:
Q  93 gatgtttctattatatttggtatatatgtaattgactaagtaatgatgttttctatttaaaatatatcatatatgtaattgactaattgttgttttcttt 192  Q
    |||||||||||||| ||||| |||||||| |||||||||||||||||||| ||| |||   |||||||||||||||||||||||||||||   |||||||    
T  22493018 gatgtttctattatttttgggatatatgtgattgactaagtaatgatgttctctttttgggatatatcatatatgtaattgactaattgtcactttcttt 22492919  T
Q  193 actatcaatattatttacatttatatttct 222  Q
    | ||||||||||| ||| ||||||||||||    
T  22492918 attatcaatattacttatatttatatttct 22492889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 48006187 - 48006260
Alignment:
Q  77 tatgtgtgggctacctgatgtttctattatatttggtatatatgtaattgactaagtaatgatgttttctattt 150  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  48006187 tatgtgtgggttacctgatgtttctattatatttggtatatatgtaattgactaaataatgatgttttctattt 48006260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 49069292 - 49069401
Alignment:
Q  1 ttattctttttaaaaacaattatccaatacttttcagatacatccggaata--cgagggataggcggtggaaaaccgatatgtgtgggctacctgatgtt 98  Q
    ||||| |||| |||||||||||||| |||||||||||||||||| || |||   |||  ||||||||||||||||||||||||| |||||||||||||||    
T  49069292 ttatttttttaaaaaacaattatccgatacttttcagatacatctgggataatagagatataggcggtggaaaaccgatatgtgcgggctacctgatgtt 49069391  T
Q  99 tctattatat 108  Q
    ||||||||||    
T  49069392 tctattatat 49069401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 21058947 - 21059046
Alignment:
Q  1 ttattctttttaaaaacaattatccaatactttt-cagatacatccggaatacgagggataggcggtggaaaaccgatatgtgtgggctacctgatgttt 99  Q
    ||||| ||||||||||||||||||| |||||||| |||||||||  || |||| || ||||  |||||||||||||||||||| ||||||||||||||||    
T  21058947 ttattttttttaaaaacaattatccgatactttttcagatacatatgggatacaagcgatatacggtggaaaaccgatatgtgcgggctacctgatgttt 21059046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 21059103 - 21059172
Alignment:
Q  161 atatatgtaattgactaattgttgttttctttactatcaatattatttacatttatatttctattgtttt 230  Q
    |||||| ||||||||||||||||| |||||||| |||||| |||| ||||||||||||||||||||||||    
T  21059103 atatatataattgactaattgttgctttctttattatcaacattacttacatttatatttctattgtttt 21059172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 11891926 - 11891993
Alignment:
Q  161 atatatgtaattgactaattgttgttttctttactatcaatattatttacatttatatttctattgtt 228  Q
    ||||||||||||||||||||||   |||||||| ||||||||||| ||||||||||||||||||||||    
T  11891926 atatatgtaattgactaattgtcactttctttattatcaatattacttacatttatatttctattgtt 11891993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 36561756 - 36561662
Alignment:
Q  12 aaaaacaattatccaatacttttcagatacatccggaatacgagggataggcggtggaaaaccgatatgtgtgggctacctgatgtttctattat 106  Q
    ||||| |||||||  |||||||||| ||||||  |  ||||||| |||||| ||||||||||||||||||| |||||| ||||||||||||||||    
T  36561756 aaaaagaattatctgatacttttcaaatacatatgtgatacgagcgataggtggtggaaaaccgatatgtgcgggctagctgatgtttctattat 36561662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 182
Target Start/End: Complemental strand, 3691444 - 3691293
Alignment:
Q  27 atacttttcagatacatccggaatacg--agggataggcggtggaaaaccgatatgtgtgggctacctgatgtttctattatatttggtatatatgtaat 124  Q
    |||||||||||||||||| || |||||  |||||||| | ||||||||||||||||||| || |||   ||||||||||||| ||| | |||| ||||||    
T  3691444 atacttttcagatacatcagggatacgcgagggatagactgtggaaaaccgatatgtgtcggatac--aatgtttctattattttttggatatgtgtaat 3691347  T
Q  125 tgactaagtaatgatgttttctatttaaaatatatcatatatgtaattgactaattgt 182  Q
         || || |  |||||||| |||  ||||||||||||||||||||||||||||||    
T  3691346 ----gaactactagtgttttctttttggaatatatcatatatgtaattgactaattgt 3691293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 11892672 - 11892735
Alignment:
Q  161 atatatgtaattgactaattgttgttttctttactatcaatattatttacatttatatttctat 224  Q
    ||||||||||||||||||||||   |||| ||| ||||||||||| ||||||||||||||||||    
T  11892672 atatatgtaattgactaattgtcactttccttattatcaatattacttacatttatatttctat 11892735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 97 - 203
Target Start/End: Complemental strand, 24016716 - 24016610
Alignment:
Q  97 tttctattatatt-tggtatatatgtaattgactaagtaatgatgttttctatttaaaatatatcatatatgtaattgactaattgttgttttctttact 195  Q
    |||||||||| || ||| |||||||||||||| |||||||| ||||| ||| ||||  |||||||||||| ||||||||||||||||   ||||| || |    
T  24016716 tttctattattttgtgggatatatgtaattgaataagtaataatgttctctttttaggatatatcatata-gtaattgactaattgtcactttctatatt 24016618  T
Q  196 atcaatat 203  Q
    ||||||||    
T  24016617 atcaatat 24016610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 181126 - 180907
Alignment:
Q  8 ttttaaaaacaattatccaatacttttcagatacatccggaatacgagggataggcggtggaaaaccgatatgtgtgggctacctgatgtttctattata 107  Q
    |||| |||||||| |||| |||||||||||||||||| || ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  181126 tttttaaaacaatcatccgatacttttcagatacatctgggatacgagggataggcagtggaaaaccgatatgtgcgggctacctgatgtttctattata 181027  T
Q  108 tttggtatatatgtaattgactaagtaatgatgttttctatttaaaatatatcatatatgtaattgactaattgttgttttctttactatcaatattatt 207  Q
    ||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||| | |||||||| |||||||| || |    
T  181026 tttggtatatatgtaattgactaagtaatgatgatttctatttaggatatatcatatatgtaattgactaattgtcgctttctttattatcaata-tact 180928  T
Q  208 tacatttatatttctattgtt 228  Q
    ||||||| ||||| |||||||    
T  180927 tacatttttatttatattgtt 180907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 15880565 - 15880774
Alignment:
Q  19 attatccaatacttttcagatacatccggaatacgagggataggcggtggaaaaccgatatgtgtgggctacctgatgtttctattatatttggtatata 118  Q
    |||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||| |  |||||||||||||||||||||||||||||||||||    
T  15880565 attatccaatacttttcagatacatctgggatacgagggatatgcggtggaaaaccgatatatacgggctacctgatgtttctattatatttggtatata 15880664  T
Q  119 tgtaattgactaagtaatgatgttttctatttaaaatatatcatatatgtaattgactaattgttgttttctttactatcaatattatttacatttatat 218  Q
    |||||||||||||||||||||||| |||| |||  ||||||||||||||||||||| || |||| | |||||||| ||||||||||| ||||||||||||    
T  15880665 tgtaattgactaagtaatgatgttctctacttaggatatatcatatatgtaattgattagttgtcgctttctttattatcaatattacttacatttatat 15880764  T
Q  219 ttctattgtt 228  Q
    ||||||||||    
T  15880765 ttctattgtt 15880774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 27 - 228
Target Start/End: Original strand, 13289604 - 13289805
Alignment:
Q  27 atacttttcagatacatccggaatacgagggataggcggtggaaaaccgatatgtgtgggctacctgatgtttctattatatttggtatatatgtaattg 126  Q
    |||||||||||||||||| || ||||||| ||||||| || ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  13289604 atacttttcagatacatctgggatacgagcgataggcagtagaaaaccgatatgtgcgggctacctaatgtttctattatatttggtatatatgtaattg 13289703  T
Q  127 actaagtaatgatgttttctatttaaaatatatcatatatgtaattgactaattgttgttttctttactatcaatattatttacatttatatttctattg 226  Q
    | |||||||||||||||||||||||  ||||||||||||||||||| ||||||||| | |||||||| ||||||||||| ||||||||||||||||||||    
T  13289704 attaagtaatgatgttttctatttaggatatatcatatatgtaatttactaattgtcgctttctttattatcaatattacttacatttatatttctattg 13289803  T
Q  227 tt 228  Q
    ||    
T  13289804 tt 13289805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 37134290 - 37134075
Alignment:
Q  12 aaaaacaattatccaatacttttcagatacatccggaatacgagggataggcggtggaaaaccgatatgtgtgggctacctgatgtttctattatatttg 111  Q
    |||||||||||||| |||||||||||||||||| || ||||||||||||||| ||||||||| ||||||| |||||||| ||||||||||||||||||||    
T  37134290 aaaaacaattatccgatacttttcagatacatctgggatacgagggataggcagtggaaaactgatatgtatgggctac-tgatgtttctattatatttg 37134192  T
Q  112 gtatatatgtaattgactaagtaatgatgttttctatttaaaatatatcatatatgtaattgactaattgttgttttctttactatcaatattatttaca 211  Q
    ||||||||| ||||||||||||||||||||||||||||||   ||||| |||||||||||||||||||||| | |||||||| |||||| |||| |||||    
T  37134191 gtatatatgcaattgactaagtaatgatgttttctatttatgttatattatatatgtaattgactaattgtcgctttctttattatcaacattacttaca 37134092  T
Q  212 tttatatttctattgtt 228  Q
    ||||||||| |||||||    
T  37134091 tttatatttttattgtt 37134075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 13 - 228
Target Start/End: Original strand, 43214690 - 43214906
Alignment:
Q  13 aaaacaattatccaatacttttcagatacatccggaatacgagggataggcggtggaaaaccgatatgtgtgggctacctgatgtttctattatatttgg 112  Q
    ||||||||||| |||||||||||||||||||  || ||||||| ||||||||||||||||| |||||||| | |||| ||||||||||||||||||||||    
T  43214690 aaaacaattattcaatacttttcagatacatttgggatacgagagataggcggtggaaaactgatatgtgcgcgctatctgatgtttctattatatttgg 43214789  T
Q  113 tatatatgtaattgact-aagtaatgatgttttctatttaaaatatatcatatatgtaattgactaattgttgttttctttactatcaatattatttaca 211  Q
    ||||| ||||||||||| ||||||||||| ||||||||||  ||||||||||||||||||||||||||||| | |||||||| ||||||||||| |||||    
T  43214790 tatatctgtaattgactaaagtaatgatgatttctatttaggatatatcatatatgtaattgactaattgtcgctttctttattatcaatattacttaca 43214889  T
Q  212 tttatatttctattgtt 228  Q
    ||| |||||||||||||    
T  43214890 tttctatttctattgtt 43214906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 32 - 228
Target Start/End: Original strand, 25933699 - 25933895
Alignment:
Q  32 tttcagatacatccggaatacgagggataggcggtggaaaaccgatatgtgtgggctacctgatgtttctattatatttggtatatatgtaattgactaa 131  Q
    ||||||||| ||| || ||| |||||||||| ||||||||| ||||||||| |||||| | |||||||||||||||||| ||||||||||||| ||||||    
T  25933699 tttcagatatatctgggatatgagggataggtggtggaaaatcgatatgtgcgggctagccgatgtttctattatatttagtatatatgtaatcgactaa 25933798  T
Q  132 gtaatgatgttttctatttaaaatatatcatatatgtaattgactaattgttgttttctttactatcaatattatttacatttatatttctattgtt 228  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||| | |||||||| || |||||||| ||||||||||||||||||||||    
T  25933799 gtaatgatgttttctatttaggatatatcatatatgtaattgactaattgtcgctttctttattaacaatattacttacatttatatttctattgtt 25933895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 8 - 152
Target Start/End: Complemental strand, 40497388 - 40497244
Alignment:
Q  8 ttttaaaaacaattatccaatacttttcagatacatccggaatacgagggataggcggtggaaaaccgatatgtgtgggctacctgatgtttctattata 107  Q
    |||| ||||||||||||| |||||||||||||||||  || |||||||| |||||| ||||||||| |||||||| || ||||| |||||||||||||||    
T  40497388 tttttaaaacaattatccgatacttttcagatacatttgggatacgaggaataggcagtggaaaactgatatgtgcggactaccagatgtttctattata 40497289  T
Q  108 tttggtatatatgtaattgactaagtaatgatgttttctatttaa 152  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  40497288 tttggtatatatgtaattgactaaataatgatgttttctatttaa 40497244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 220
Target Start/End: Complemental strand, 33737847 - 33737740
Alignment:
Q  113 tatatatgtaattgactaagtaatgatgttttctatttaaaatatatcatatatgtaattgactaattgttgttttctttactatcaatattatttacat 212  Q
    ||||||| |||||||||||  ||||||||  ||  ||| | ||||||||||||||||||||||||||||||  ||||||||  |||||||||| ||  ||    
T  33737847 tatatatataattgactaaccaatgatgtactcattttgagatatatcatatatgtaattgactaattgttactttctttatcatcaatattacttgtat 33737748  T
Q  213 ttatattt 220  Q
    ||||||||    
T  33737747 ttatattt 33737740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 131
Target Start/End: Complemental strand, 33741964 - 33741862
Alignment:
Q  31 ttttcagatacatccggaatacg--agggataggcggtggaaaaccgatatgtgtgggctacctgatgtttctattatatttggtatatatgtaattgac 128  Q
    ||||||||||||||  |||||||  |||||||| |||||||||| ||||| | | ||| ||| |||||||| |||||| ||||| |||||||||||||||    
T  33741964 ttttcagatacatcaagaatacgcgagggatagtcggtggaaaatcgatacgcgcgggatacatgatgtttttattatttttgggatatatgtaattgac 33741865  T
Q  129 taa 131  Q
    |||    
T  33741864 taa 33741862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 16219241 - 16219184
Alignment:
Q  161 atatatgtaattgactaattgttgttttctttactatcaatattatttacatttatat 218  Q
    |||||| ||||||| ||||||| || ||||||| ||||||||||| ||| ||||||||    
T  16219241 atatatttaattgattaattgtcgtcttctttattatcaatattacttatatttatat 16219184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 10718 - 10939
Alignment:
Q  7 tttttaaaaacaattatccaatacttttcagatacatccggaatacgagggataggcggtggaaaaccgatatgtgtgggctacctgatgtttctattat 106  Q
    ||||||||||||||| |||||| ||||||||||||||| || ||||||| ||| |||||||||||||  || |||| | |||||||||||||||||||||    
T  10718 tttttaaaaacaattctccaatccttttcagatacatctgggatacgagcgattggcggtggaaaactaatttgtgcgagctacctgatgtttctattat 10817  T
Q  107 atttggtatatatgtaattgactaagtaatgatgttttctatttaaaatatatcatatatgtaattgactaattgttgttttctttactatcaatattat 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| || | |||||||| ||| |||||||     
T  10818 atttggtatatatgtaattgactaagtaatgatgttttctatttatgatatatcatatatgtaattgactaatcgtcgctttctttattattaatattac 10917  T
Q  207 ttacatttatatttctattgtt 228  Q
    ||| |||||||  |||||||||    
T  10918 ttagatttatacgtctattgtt 10939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 41472611 - 41472398
Alignment:
Q  17 caattatccaatacttttcagatacatccggaatacgagggataggcggtggaaaac-cgatatgtgtgggctacctgatgtttctattatattt-ggta 114  Q
    |||||||||||||||||||||||||||| |  |||| ||||||| || ||||||||  ||||||||| ||||||||||||||||||||||||||| ||||    
T  41472611 caattatccaatacttttcagatacatctgagatactagggatatgcagtggaaaaatcgatatgtgggggctacctgatgtttctattatattttggta 41472512  T
Q  115 tatatgtaattgactaagtaatgatgttttctatttaaaatatatcatatatgtaattgactaattgttgttttctttactatcaatattatttacattt 214  Q
    ||||| |||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||| | ||| | || ||||||||||| ||||||||    
T  41472511 tatatataattgactaagtaatgatgctttctatttaggatatatcatatatgtaattgactaattgtcgctttatctattatcaatattacttacattt 41472412  T
Q  215 atatttctattgtt 228  Q
    ||||||||||||||    
T  41472411 atatttctattgtt 41472398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 65 - 226
Target Start/End: Original strand, 12190557 - 12190717
Alignment:
Q  65 gtggaaaaccgatatgtgtgggctacctgatgtttctattatatttggtatatatgtaattgactaagtaatgatgttttctatttaaaatatatcatat 164  Q
    |||||||||||||||||  | | ||  ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||    
T  12190557 gtggaaaaccgatatgtacgagttagttgatgtttctattatatttggtatatacgtaattg-ctaagtaatgatgttttctatttagaatatatcatat 12190655  T
Q  165 atgtaattgactaattgttgttttctttactatcaatattatttacatttatatttctattg 226  Q
    |||||||||||||||||| | |||||||| ||||||||||| ||| ||||||||||||||||    
T  12190656 atgtaattgactaattgtcgctttctttattatcaatattacttatatttatatttctattg 12190717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 54 - 225
Target Start/End: Complemental strand, 31036954 - 31036784
Alignment:
Q  54 agggataggcggtggaaaaccgatatgtgtgggctacctgatgtttctattatatttggtatatatgtaattgactaagtaatgatgttttctatttaaa 153  Q
    ||||||||||||||| | | ||||||| | | ||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||| ||||||||      
T  31036954 agggataggcggtgggatatcgatatgcgcgagctacctgatgtttctattatatttggtatatatgtaattgaccaagt-atggtgttctctatttagg 31036856  T
Q  154 atatatcatatatgtaattgactaattgttgttttctttactatcaatattatttacatttatatttctatt 225  Q
    ||||||||||||||||||||| | ||||| |||||| ||| |||||||| || ||| | |||||||| ||||    
T  31036855 atatatcatatatgtaattgattcattgtcgttttcattattatcaatactacttatacttatatttatatt 31036784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 17916688 - 17916617
Alignment:
Q  157 tatcatatatgtaattgactaattgttgttttctttactatcaatattatttacatttatatttctattgtt 228  Q
    |||||||||||||||||||||||||  | |||||||| ||||||||||  ||||||||||||||||||||||    
T  17916688 tatcatatatgtaattgactaattgccgctttctttattatcaatattccttacatttatatttctattgtt 17916617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 228
Target Start/End: Original strand, 35618274 - 35618406
Alignment:
Q  92 tgatgtttctattatatttggtatatatgtaattgactaagtaatgatgttttctatttaaaatatatcatatatgtaattgactaattgttgttttctt 191  Q
    ||||||||||||||| ||||| |||||||||||||| || |||||  |||| ||| |||   ||||||    ||||||||||||||| |||  |||||||    
T  35618274 tgatgtttctattatttttgggatatatgtaattgaataggtaatagtgttctctttttgggatatat----tatgtaattgactaactgtcattttctt 35618369  T
Q  192 tactatcaatattatttacatttatatttctattgtt 228  Q
    || |||||||||| |||| |||||||||||| |||||    
T  35618370 tattatcaatattgtttatatttatatttctgttgtt 35618406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 173
Target Start/End: Original strand, 19321510 - 19321658
Alignment:
Q  27 atacttttcagatacatccggaatacg--agggataggcggtggaaaaccgatatgtgtgggctacctgatgtttctattatatttggtatatatgtaat 124  Q
    ||||||||||||||||||  | |||||  |||||||||| |||||||||||||| |   | | ||| |||| |||||||||| ||| | || ||  ||||    
T  19321510 atacttttcagatacatcgtggatacgcgagggataggcagtggaaaaccgatacgcacgtgatacgtgatatttctattattttttggatgtacataat 19321609  T
Q  125 tgactaagtaatgatgttttctatttaaaatatatcatatatgtaattg 173  Q
     ||||||||||| ||||| ||| ||| | ||||||||||||||||||||    
T  19321610 ggactaagtaataatgttctctttttgagatatatcatatatgtaattg 19321658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 42454869 - 42454934
Alignment:
Q  163 atatgtaattgactaattgttgttttctttactatcaatattatttacatttatatttctattgtt 228  Q
    |||| ||||||||||| |||  ||||||||| |||||||||| |||| |||||||||||| |||||    
T  42454869 atatataattgactaactgtcattttctttattatcaatattgtttatatttatatttctgttgtt 42454934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 220
Target Start/End: Complemental strand, 19102067 - 19102001
Alignment:
Q  154 atatatcatatatgtaattgactaattgttgttttctttactatcaatattatttacatttatattt 220  Q
    ||||||||||||| |||||||||||||||  |||| |||| ||| ||||||| ||  ||||||||||    
T  19102067 atatatcatatatataattgactaattgtcattttttttattattaatattacttgtatttatattt 19102001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 220
Target Start/End: Original strand, 21317406 - 21317472
Alignment:
Q  154 atatatcatatatgtaattgactaattgttgttttctttactatcaatattatttacatttatattt 220  Q
    |||||| ||||||||||||||||||||||   ||| |||| ||||||||||| | | ||||||||||    
T  21317406 atatataatatatgtaattgactaattgtcactttatttattatcaatattactcatatttatattt 21317472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 10153833 - 10153882
Alignment:
Q  93 gatgtttctattatatttggtatatatgtaattgactaagtaatgatgtt 142  Q
    |||||||||||||| ||| | |||||||||||||||||| ||||| ||||    
T  10153833 gatgtttctattatttttaggatatatgtaattgactaaataatggtgtt 10153882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 36785128 - 36785191
Alignment:
Q  18 aattatccaatacttttcagatacatccggaata--cgagggataggcggtggaaaaccgatat 79  Q
    |||| |||||||||||||||||||||| | ||||  |||||||||| ||||| ||||| |||||    
T  36785128 aattgtccaatacttttcagatacatcagaaatactcgagggatagacggtgaaaaacagatat 36785191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 53165507 - 53165287
Alignment:
Q  8 ttttaaaaacaattatccaatacttttcagatacatccggaatacgagggataggcggtggaaaaccgatatgtgtgggctacctgatgtttctattata 107  Q
    |||| ||||||||||||||||| |||||||||||||| || ||||||| |||||||||||||||||| |||||   | |||| |||||||||||||||||    
T  53165507 tttttaaaacaattatccaatatttttcagatacatctgggatacgagcgataggcggtggaaaaccaatatgaacgagctatctgatgtttctattata 53165408  T
Q  108 tttggtatatatgtaattgactaagtaatgatgttttctatttaaaatatatcatatatgtaattgactaattgttgttttctttactatcaatattatt 207  Q
    ||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||| ||||||    ||| |||| ||||||||||| |    
T  53165407 tttggtatatatgtaattgactaagtaatgatgttttttatttatgatatatcatatatgtaattgattaattgacactttatttattatcaatattact 53165308  T
Q  208 tacatttatatttctattgtt 228  Q
    ||||||||| ||| |||||||    
T  53165307 tacatttatgtttttattgtt 53165287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 78 - 228
Target Start/End: Original strand, 30226641 - 30226791
Alignment:
Q  78 atgtgtgggctacctgatgtttctattatatttggtatatatgtaattgactaagtaatgatgttttctatttaaaatatatcatatatgtaattgacta 177  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  30226641 atgtgtgggctacctaatgtttctgttatatttggtatatatgtaattgactaagtaatgatgctttctatttagaatatatcatatatgtaattgacta 30226740  T
Q  178 attgttgttttctttactatcaatattatttacatttatatttctattgtt 228  Q
    ||||| |||||||||| ||||||||||| |||||||||||||| |||||||    
T  30226741 attgtcgttttctttattatcaatattacttacatttatatttttattgtt 30226791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 7754196 - 7754399
Alignment:
Q  18 aattatccaatacttttcagatacatccggaatacgagggataggcggtggaaaaccgatatgtgtgggctacctgatgtttctattata----tttggt 113  Q
    ||||||||||||||||| ||||||||| ||  || ||| |||||| |||||||||||||||||||  |  ||||| ||||||||||||||    ||||||    
T  7754196 aattatccaatacttttaagatacatctggggtaagagcgataggtggtggaaaaccgatatgtgcagattacctaatgtttctattatatatatttggt 7754295  T
Q  114 atatatgtaattgactaagtaatgatgttttctatttaaaatatatcatatatgtaattgactaattgttgttttctttactatcaatattatttacatt 213  Q
    |||||||||||||| |||||||| ||||||| ||||||  ||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||    
T  7754296 atatatgtaattgattaagtaataatgttttttatttatgatatatcatatatgtaattgactaattgtcgttttctttattatcaatattacttacatt 7754395  T
Q  214 tata 217  Q
    ||||    
T  7754396 tata 7754399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 7 - 193
Target Start/End: Original strand, 5271586 - 5271774
Alignment:
Q  7 tttttaaaaacaattatccaatacttttcagatacatccggaatacgagggataggcggtggaaaaccgatatgtgtgggctacctgatgtttctattat 106  Q
    |||||||||| |||||||| |||||||||  ||||||| |  ||| |||||||||||||| ||||||||||||||| ||||||| |||||||||||||||    
T  5271586 tttttaaaaaaaattatccgatacttttcttatacatctgagatatgagggataggcggtagaaaaccgatatgtgcgggctacatgatgtttctattat 5271685  T
Q  107 atttgg--tatatatgtaattgactaagtaatgatgttttctatttaaaatatatcatatatgtaattgactaattgttgttttcttta 193  Q
    ||||||  |||||||||||| ||||||||||||||||||||| | ||| |||||||||||||||||||| |||||||| | ||||||||    
T  5271686 atttggtatatatatgtaatcgactaagtaatgatgttttctgtgtaagatatatcatatatgtaattggctaattgtcgctttcttta 5271774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 76 - 228
Target Start/End: Original strand, 3983851 - 3984003
Alignment:
Q  76 atatgtgtgggctacctgatgtttctattatatttggtatatatgtaattgactaagtaatgatgttttctatttaaaatatatcatatatgtaattgac 175  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||  |||||||||||||| || ||||    
T  3983851 atatgtgcgggctacctgatgtttctattatatttggtacatatgtcattgactaagtaatgatgttttctatttaggatatatcatatatgcaagtgac 3983950  T
Q  176 taattgttgttttctttactatcaatattatttacatttatatttctattgtt 228  Q
    ||||||| | |||||||| |||| |||||| ||||||||||||||||||||||    
T  3983951 taattgtcgctttctttattatctatattacttacatttatatttctattgtt 3984003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 70 - 228
Target Start/End: Original strand, 15769091 - 15769248
Alignment:
Q  70 aaaccgatatgtgtgggctacctgatgtttctattatatttggtatatatgtaattgactaagtaatgatgttttctatttaaaatatatcatatatgta 169  Q
    |||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||| |||||||||    
T  15769091 aaactgatatgtgcaggctacctgatgtttctattatatttggtatatatgtaattgactaagtgatgatgttttctatttaggatatatgatatatgta 15769190  T
Q  170 attgactaattgttgttttctttactatcaatattatttacatttatatttctattgtt 228  Q
    ||||||||||||| | |||||||  ||| ||||||| ||||| ||||||||||||||||    
T  15769191 attgactaattgtcgctttctttcttattaatattacttaca-ttatatttctattgtt 15769248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 93 - 220
Target Start/End: Complemental strand, 1553853 - 1553726
Alignment:
Q  93 gatgtttctattatatttggtatatatgtaattgactaagtaatgatgttttctatttaaaatatatcatatatgtaattgactaattgttgttttcttt 192  Q
    |||||||||||||| |||   |||||||||||||||||||||||| |||| ||| |||| ||||||||||||||||||||||||| ||||   |||||||    
T  1553853 gatgtttctattatttttaaaatatatgtaattgactaagtaatggtgttctctttttagaatatatcatatatgtaattgactagttgtcactttcttt 1553754  T
Q  193 actatcaatattatttacatttatattt 220  Q
    | ||||| ||||| ||| ||||||||||    
T  1553753 attatcattattacttatatttatattt 1553726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 92
Target Start/End: Original strand, 30226536 - 30226622
Alignment:
Q  7 tttttaaaaac-aattatccaatacttttcagatacatccggaatacgagggataggcggtggaaaaccgatatgtgtgggctacct 92  Q
    ||||||||||| |||||||  |||||||||||||||||  || ||| |||||||||||||||||||||||||||||| |||||||||    
T  30226536 tttttaaaaaccaattatctgatacttttcagatacatttgggatatgagggataggcggtggaaaaccgatatgtgcgggctacct 30226622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 182
Target Start/End: Original strand, 47118177 - 47118257
Alignment:
Q  102 attatatttggtatatatgtaattgactaagtaatgatgttttctatttaaaatatatcatatatgtaattgactaattgt 182  Q
    ||||| ||||| ||| |||||||||| |||||||||||||| ||| |||  ||||||||||||| |||||||| |||||||    
T  47118177 attatttttgggatacatgtaattgattaagtaatgatgttctcttttttgaatatatcatatacgtaattgattaattgt 47118257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 29715868 - 29715936
Alignment:
Q  114 atatatgtaattgactaagtaatgatgttttctatttaaaatatatcatatatgtaattgactaattgt 182  Q
    |||||||||||  |||||||||| ||||| ||| |||   |||||||||||||||||||||||||||||    
T  29715868 atatatgtaatgaactaagtaataatgttctcttttttggatatatcatatatgtaattgactaattgt 29715936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 15769050 - 15769082
Alignment:
Q  12 aaaaacaattatccaatacttttcagatacatc 44  Q
    |||||||||||||| ||||||||||||||||||    
T  15769050 aaaaacaattatccgatacttttcagatacatc 15769082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 182
Target Start/End: Complemental strand, 21382223 - 21382155
Alignment:
Q  114 atatatgtaattgactaagtaatgatgttttctatttaaaatatatcatatatgtaattgactaattgt 182  Q
    ||||||||||| |||||||||||  |||| ||| | |   |||||||||||||||||| ||||||||||    
T  21382223 atatatgtaatggactaagtaatagtgttctctttatgggatatatcatatatgtaatcgactaattgt 21382155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 26560929 - 26561129
Alignment:
Q  18 aattatccaatacttttcagatacatccggaatacgagggataggcggtggaaaaccgatatgtgtgggctacctgatgtttctattatatttggtatat 117  Q
    ||||||||| ||||||||||||||||  |  |||| |||||||||||||||||||   |||| || ||||||  ||||||||||| ||||||| ||||||    
T  26560929 aattatccattacttttcagatacatgtgagatacaagggataggcggtggaaaattcatatatgcgggctatatgatgtttctactatattttgtatat 26561028  T
Q  118 atgtaattgactaagtaatgatgttttctatttaaaatatatcatatatgtaattgactaattgttgttttctttactatcaatattatttacatttata 217  Q
    |||||||||||||| ||| || ||||| ||||||  ||||||||||||      ||||||||| | | |||||||| |    |||||| |||||||||||    
T  26561029 atgtaattgactaaataacgacgttttttatttaggatatatcatata------tgactaattatcgctttctttatt----atattacttacatttata 26561118  T
Q  218 tttctattgtt 228  Q
    |||||||||||    
T  26561119 tttctattgtt 26561129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 2423031 - 2423084
Alignment:
Q  167 gtaattgactaattgttgttttctttactatcaatattatttacatttatattt 220  Q
    ||||||||||||||||   |||||||| ||||||||||||||| |||| |||||    
T  2423031 gtaattgactaattgtcactttctttattatcaatattatttatatttttattt 2423084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 9421153 - 9421116
Alignment:
Q  7 tttttaaaaacaattatccaatacttttcagatacatc 44  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  9421153 ttttaaaaaacaattatccgatacttttcagatacatc 9421116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 169
Target Start/End: Complemental strand, 30008692 - 30008534
Alignment:
Q  12 aaaaacaattatccaatacttttcagatacatccggaatacg--agggataggcggtggaaaaccgatatgtgtgggctacctgatgtttctattatatt 109  Q
    |||||||||| ||| |||||||| |||| ||||  | |||||  || ||||||| ||||||||  |||||| | ||  ||| |||| ||||||||||  |    
T  30008692 aaaaacaattgtccgatactttttagattcatcgaggatacgcaagagataggcagtggaaaattgatatgcgcgga-tacgtgatatttctattattat 30008594  T
Q  110 tggtatatatgtaattgactaagtaatgatgttttctatttaaaatatatcatatatgta 169  Q
    ||| ||| ||||||||||||||| || | |||| ||| |||  ||||| |||||||||||    
T  30008593 tgggatagatgtaattgactaagaaaaggtgttctctttttggaatatgtcatatatgta 30008534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 32652692 - 32652660
Alignment:
Q  195 tatcaatattatttacatttatatttctattgt 227  Q
    ||||||||||| |||||||||||||||||||||    
T  32652692 tatcaatattacttacatttatatttctattgt 32652660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 14866 - 14799
Alignment:
Q  154 atatatcatatatgtaatt--gactaattgttgttttctttactatcaatattatttacatttatatt 219  Q
    |||||||||||||||||||  || ||||| ||  ||| |||| ||||||||||||||| |||||||||    
T  14866 atatatcatatatgtaattttgagtaatttttactttatttattatcaatattatttatatttatatt 14799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University