View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2924_low_1 (Length: 567)
Name: NF2924_low_1
Description: NF2924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2924_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 512; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 19 - 558
Target Start/End: Original strand, 2214959 - 2215497
Alignment:
| Q |
19 |
actcgttctactcttacttgaaaattggacatgaaagctgctccatgtataatcaattggcattgcctgcaattgctgagtcccctttgcagcataaata |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2214959 |
actcgttctactcttacttgaaaattggacatgaaagctgctccatgtataatcaattggcattgcctgcaattgctgag-cccctttgcagcataaata |
2215057 |
T |
|
| Q |
119 |
gttggttgagttgtatccctatcttggtccaccagcagttagtctaagtaatagcggaatgtgtggaaagaaataagttaacataattgttagttgttac |
218 |
Q |
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||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2215058 |
gttggttgagttgtatcactatcttggtccaccggcagttagtctaagtaatagcggaatgtgtggaaagaaataagttaacataattgttagttgttac |
2215157 |
T |
|
| Q |
219 |
gcaattcaagtaagaaaaataaggatgatatcaggtcaatggaaactaatgtattgtttgaatagttgacttgggtcaatttttgtagatacatatgcat |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2215158 |
gcaattcaagtaagaaaaataaggatgatatcaggtcaatggaaactaatgcattgtttgaatagttgacttgggtcaatttttgtagatacatatgcat |
2215257 |
T |
|
| Q |
319 |
tagaagttatttttctaaacctcattacaagtatggctagcagaaattaatgtctcttttgctacttctataaacatattgtggtttccattcctaattt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2215258 |
tagaagttatttttctaaacctcattacaagtatggctagcagaaattaatgtctcttttgctacttctataaacatattgtggtttccattcctaattt |
2215357 |
T |
|
| Q |
419 |
gacttttaatacttgctacagggtgaaagtcagagttttgatttacctgtaaagaaaagaagcgatatttgtacaataatgtatactagcggaactactg |
518 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2215358 |
gacttttaatacttgccacagggtgaaagtcagagttttgatttacctgtaaagaaaagaagcgatatttgtacaataatgtatactagcggaactactg |
2215457 |
T |
|
| Q |
519 |
gtgaccccaagggagtattgatatccaatgggagtattat |
558 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||| |
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| T |
2215458 |
gtgaccccaagggagtattgatatccaataggagtattat |
2215497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 19 - 558
Target Start/End: Original strand, 2202366 - 2202900
Alignment:
| Q |
19 |
actcgttctactcttacttgaaaattggacatgaaagctgctccatgtataatcaattggcattgcctgcaattgct--gagtcccctttgcagcataaa |
116 |
Q |
| |
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|||| ||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||| || ||||||||| ||||||||||| |
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| T |
2202366 |
actctttctactcttacttgtaaattggacatgaaagctgctccttgtataattaattggcattgcctgcaatttctctgagtcccctatgcagcataaa |
2202465 |
T |
|
| Q |
117 |
tagttggttgagttgtatccctatcttggtccaccagcagttagtctaagtaatagcggaatgtgtggaaagaaataagttaacataattgttagttgtt |
216 |
Q |
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||||||||||||||||||| |||||| ||||| | |||||||| ||||||| ||| |||||||||||||||||||||||||||||| |||||| |
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| T |
2202466 |
tagttggttgagttgtatcactatctcggtcctctggcagttagcctaagtactagtggaatgtgtggaaagaaataagttaacatacttgttat----- |
2202560 |
T |
|
| Q |
217 |
acgcaattcaagtaagaaaaataaggatgatatcaggtcaatggaaactaatgtattgtttgaatagttgacttgggtcaatttttgtagatacatatgc |
316 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||| |||||||||||||||||||||| ||||||||||||| |
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| T |
2202561 |
--gcaattcaagtaagaaaaataaggatgatatcaggtcaatggaaacttatgcattgattggttagttgacttgggtcaatttttatagatacatatgc |
2202658 |
T |
|
| Q |
317 |
attagaagttatttttctaaacctcattacaagtatggctagcagaaattaatgtctcttttgctacttctataaacatattgtggtttccattcctaat |
416 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||| |||||| || |
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| T |
2202659 |
attaaaagttatttttctaaacctcattacaagtatggcttgcagaaattaatgtctcttttgctacttctgtagacatattgtggtttctattccttat |
2202758 |
T |
|
| Q |
417 |
ttgacttttaatacttgctacagggtgaaagtcagagttttgatttacctgtaaagaaaagaagcgatatttgtacaataatgtatactagcggaactac |
516 |
Q |
| |
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|||| ||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2202759 |
ttgatttttaatacttgccacagggtaaaagtcatagttttgatttacctgtaaagaaaagaagcgatatctgtacaataatgtatactagcggaactac |
2202858 |
T |
|
| Q |
517 |
tggtgaccccaagggagtattgatatccaatgggagtattat |
558 |
Q |
| |
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||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
2202859 |
tggtgaccccaagggggtattgatatccaatgagagtattat |
2202900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 454 - 546
Target Start/End: Complemental strand, 41931437 - 41931345
Alignment:
| Q |
454 |
ttttgatttacctgtaaagaaaagaagcgatatttgtacaataatgtatactagcggaactactggtgaccccaagggagtattgatatccaa |
546 |
Q |
| |
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||||||| | |||||||| || | |||||| || |||||||||||||| || || ||||| || ||||| ||||||||||||||||||||||| |
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| T |
41931437 |
ttttgatcttcctgtaaaaaagaaaagcgacatatgtacaataatgtacacaagtggaacaaccggtgatcccaagggagtattgatatccaa |
41931345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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