View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2924_low_2 (Length: 388)
Name: NF2924_low_2
Description: NF2924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2924_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 378
Target Start/End: Complemental strand, 5607629 - 5607270
Alignment:
| Q |
18 |
tcaacagccttttttaaagttccatctccaagcactttactgtgctttccccagccagttaaaatgctacnnnnnnnnnnnnn----tgaaattgtgatc |
113 |
Q |
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| T |
5607629 |
tcaacagccttttttaaagttccatctccaagcactttactgtgctttccccagccagttaaaatgctacaaaaaaaaataaaaaaatgaaattgtgatc |
5607530 |
T |
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| Q |
114 |
aacaatttaatcatcttatcttattaatccaattaaatgaaaacaataaaaaattcataggtagtaaagatccatacttgacaaacttaggcagttgaat |
213 |
Q |
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| T |
5607529 |
aacaatttaatcatcttat-----taatccaattaaatgaaaacaataaaaaattcataggtagtaaagatccatacttgacaaacttaggcagttgaat |
5607435 |
T |
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| Q |
214 |
gccttgaaaaagagaactatgcaaactgagcaaccatgaatgaaccattgcacaagcagcaccacaagacatcagatgcagatccaagcaagaaattgac |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5607434 |
gccttgaaaaagagaactatgcaaactgagcaaccatgaatgaaccattgcacaagcagcaccacaagacatcagatgcagatccaagcaagaaattgac |
5607335 |
T |
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| Q |
314 |
cattcgcctttccacacatttcggcgtctcccttcaattacaaccatttcagctccgcgtctctg |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5607334 |
cattcgcctttccacacatttcggcgtctcccttcaattacaaccatttcagctccgcgtttctg |
5607270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 179 - 378
Target Start/End: Original strand, 5588495 - 5588694
Alignment:
| Q |
179 |
aaagatccatacttgacaaacttaggcagttgaatgccttgaaaaagagaactatgcaaactgagcaaccatgaatgaaccattgcacaagcagcaccac |
278 |
Q |
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| T |
5588495 |
aaagatccatacgtcacaatcttaggcagttcagagccttcaaataaagtactatgcatattgagcaaccatgaatgaaccattgcacaagcagcaccac |
5588594 |
T |
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| Q |
279 |
aagacatcagatgcagatccaagcaagaaattgaccattcgcctttccacacatttcggcgtctcccttcaattacaaccatttcagctccgcgtctctg |
378 |
Q |
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||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5588595 |
aagacatcagatgcagatccagacaagaaattgaccattcacctttccacacatttcggcgtctcccttcggttacaaccatttcagctccgcgtctctg |
5588694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 179 - 378
Target Start/End: Original strand, 5593456 - 5593655
Alignment:
| Q |
179 |
aaagatccatacttgacaaacttaggcagttgaatgccttgaaaaagagaactatgcaaactgagcaaccatgaatgaaccattgcacaagcagcaccac |
278 |
Q |
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|||||||||||| | |||| ||||||||||| | ||||| ||| | || |||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
5593456 |
aaagatccatacgtcacaatcttaggcagttcagagccttcaaataaagtactatgcatattgagcaaccatgaatgaaccattgcacaagcagcaccac |
5593555 |
T |
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| Q |
279 |
aagacatcagatgcagatccaagcaagaaattgaccattcgcctttccacacatttcggcgtctcccttcaattacaaccatttcagctccgcgtctctg |
378 |
Q |
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||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5593556 |
aagacatcagatgcagatccagacaagaaattgaccattcacctttccacacatttcggcgtctcccttcggttacaaccatttcagctccgcgtctctg |
5593655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 5588346 - 5588410
Alignment:
| Q |
21 |
acagccttttttaaagttccatctccaagcactttactgtgctttccccagccagttaaaatgct |
85 |
Q |
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|||||| |||| |||||||| || || | |||||| |||||||||||||| |||||||| ||||| |
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| T |
5588346 |
acagcccttttcaaagttccgtcacccatcactttgctgtgctttccccaaccagttaagatgct |
5588410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 5593307 - 5593371
Alignment:
| Q |
21 |
acagccttttttaaagttccatctccaagcactttactgtgctttccccagccagttaaaatgct |
85 |
Q |
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|||||| |||| |||||||| || || | |||||| |||||||||||||| |||||||| ||||| |
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| T |
5593307 |
acagcccttttcaaagttccgtcacccatcactttgctgtgctttccccaaccagttaagatgct |
5593371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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