View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2924_low_7 (Length: 240)
Name: NF2924_low_7
Description: NF2924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2924_low_7 |
 | |
|
| [»] scaffold0927 (1 HSPs) |
| | |
|
| [»] scaffold1033 (1 HSPs) |
| | |
|
| [»] scaffold1029 (1 HSPs) |
| | |
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| [»] scaffold1126 (1 HSPs) |
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| [»] scaffold0870 (1 HSPs) |
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Alignment Details
Target: scaffold0927 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0927
Description:
Target: scaffold0927; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 594 - 374
Alignment:
| Q |
18 |
caacactaacattaatcaatgacttgacatgttcatggagattagagaggctcggattgctcttatagtggtacatgaggggaaccattctagcagcatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
594 |
caacactaacattaatcaatgacttgacatgttcatggagattagagaggctcggattgctcttatagtggtacatgaggggaaccattctagcagcatt |
495 |
T |
|
| Q |
118 |
cagacaaaaattggaaaatgatgatgaaaactgatttgcgaccagaatttcttgattgagacatttccattcatttgaaatcatgtgagcaacatgtgtt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
494 |
cagacaaaaattggaaaatgatgatgaaaactgatttgcgaccataatttcttgattgagacatttccattcatttgaaatcatgtgagcaacatgtgtt |
395 |
T |
|
| Q |
218 |
tgcacgtcttcactggaaata |
238 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
394 |
tgcacgtcttcactggaaata |
374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 28566359 - 28566579
Alignment:
| Q |
18 |
caacactaacattaatcaatgacttgacatgttcatggagattagagaggctcggattgctcttatagtggtacatgaggggaaccattctagcagcatt |
117 |
Q |
| |
|
|||||||||||||||||||||| || |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28566359 |
caacactaacattaatcaatgagttaacatgttcctggagattagagaggctcgggttgctcttatagtggtacatgaggggaaccattctagcagcatt |
28566458 |
T |
|
| Q |
118 |
cagacaaaaattggaaaatgatgatgaaaactgatttgcgaccagaatttcttgattgagacatttccattcatttgaaatcatgtgagcaacatgtgtt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
28566459 |
gagacaaaaattggaaaatgatgatgaaaactgatttgtgaccagaatttcttgattgagacatttccattcatttgaaatcatgtgagcaacatgtcgt |
28566558 |
T |
|
| Q |
218 |
tgcacgtcttcactggaaata |
238 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
28566559 |
tgcacgtcttcactggaaata |
28566579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 28584334 - 28584554
Alignment:
| Q |
18 |
caacactaacattaatcaatgacttgacatgttcatggagattagagaggctcggattgctcttatagtggtacatgaggggaaccattctagcagcatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28584334 |
caacactaacattaatcaatgacttgacatgttcctggagattagagaggcttggtttgctcttatagtggtacatgaggggaaccattctagcagcatt |
28584433 |
T |
|
| Q |
118 |
cagacaaaaattggaaaatgatgatgaaaactgatttgcgaccagaatttcttgattgagacatttccattcatttgaaatcatgtgagcaacatgtgtt |
217 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
28584434 |
cagacaaaagttggaaaatgatgatgaaaactgatttgcaaccagaatttcttgattgagaaatttccattcatttgaaatcatgtgagcaacatgtcct |
28584533 |
T |
|
| Q |
218 |
tgcacgtcttcactggaaata |
238 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
28584534 |
tgcacgtcttcactggaaata |
28584554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 21 - 238
Target Start/End: Original strand, 26314254 - 26314471
Alignment:
| Q |
21 |
cactaacattaatcaatgacttgacatgttcatggagattagagaggctcggattgctcttatagtggtacatgaggggaaccattctagcagcattcag |
120 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
26314254 |
cactagcattaatcaatgacttgacatgttcctggagattagagaggcttggattgctcttatagtggtacatgaggggaaccattctagcagcattgag |
26314353 |
T |
|
| Q |
121 |
acaaaaattggaaaatgatgatgaaaactgatttgcgaccagaatttcttgattgagacatttccattcatttgaaatcatgtgagcaacatgtgtttgc |
220 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26314354 |
acaaaaattggaaaatgatgatgaaaattgatttgcaaccagaatttcttgattgagacgtttccattcatttgaaatcatgtgagcaacatgtctttgc |
26314453 |
T |
|
| Q |
221 |
acgtcttcactggaaata |
238 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
26314454 |
acgtcttcaccggaaata |
26314471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 28573104 - 28573324
Alignment:
| Q |
18 |
caacactaacattaatcaatgacttgacatgttcatggagattagagaggctcggattgctcttatagtggtacatgaggggaaccattctagcagcatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28573104 |
caacactaacattaatcaatgacttgacatgttcctggagattagagaggcttgggttgctcttatagtggtacatgaggggaaccattcttgcagcatt |
28573203 |
T |
|
| Q |
118 |
cagacaaaaattggaaaatgatgatgaaaactgatttgcgaccagaatttcttgattgagacatttccattcatttgaaatcatgtgagcaacatgtgtt |
217 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
28573204 |
gagacaaaagttggaaaatgacgatgaaaactgatttgcaaccagaatttcttgattgagacatttccattcatttgaaatcatgtgagcaacatgtctt |
28573303 |
T |
|
| Q |
218 |
tgcacgtcttcactggaaata |
238 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
28573304 |
tgcacgtcttcaccggaaata |
28573324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 29 - 230
Target Start/End: Original strand, 20615035 - 20615236
Alignment:
| Q |
29 |
ttaatcaatgacttgacatgttcatggagattagagaggctcggattgctcttatagtggtacatgaggggaaccattctagcagcattcagacaaaaat |
128 |
Q |
| |
|
||||||||||||||||||||||| | ||| |||||||||| || ||||||||||| ||||||||||| |||||||||||||||||||| || ||||||| |
|
|
| T |
20615035 |
ttaatcaatgacttgacatgttcctttagactagagaggcttgggttgctcttataatggtacatgagaggaaccattctagcagcattaaggcaaaaat |
20615134 |
T |
|
| Q |
129 |
tggaaaatgatgatgaaaactgatttgcgaccagaatttcttgattgagacatttccattcatttgaaatcatgtgagcaacatgtgtttgcacgtcttc |
228 |
Q |
| |
|
||| ||||||||||| ||| || || | || |||||||||||| |||||||||||||||||| ||||||| | |||||||||| ||||||| ||||| |
|
|
| T |
20615135 |
tggtaaatgatgatggaaatacatatgggttcaaaatttcttgatttagacatttccattcatttaaaatcatctcagcaacatgtctttgcacatcttc |
20615234 |
T |
|
| Q |
229 |
ac |
230 |
Q |
| |
|
|| |
|
|
| T |
20615235 |
ac |
20615236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 24069796 - 24070016
Alignment:
| Q |
18 |
caacactaacattaatcaatgacttgacatgttcatggagattagagaggctcggattgctcttatagtggtacatgaggggaaccattctagcagcatt |
117 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
24069796 |
caacaccaacattaatcaatgacttgacatgttcctggagattagagaggcttgagttgctcttatagtggtacatgaggagaaccattcttgcagcatt |
24069895 |
T |
|
| Q |
118 |
cagacaaaaattggaaaatgatgatgaaaactgatttgcgaccagaatttcttgattgagacatttccattcatttgaaatcatgtgagcaacatgtgtt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
24069896 |
gagacaaaaattggaaaatgatgatgaaaacttatttgtgaccagaatttcttgattgagacatttccattcatttgaaatcatgcgagcaacatgtctt |
24069995 |
T |
|
| Q |
218 |
tgcacgtcttcactggaaata |
238 |
Q |
| |
|
||||| ||||| | ||||||| |
|
|
| T |
24069996 |
tgcacctcttcgccggaaata |
24070016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 24080940 - 24080720
Alignment:
| Q |
18 |
caacactaacattaatcaatgacttgacatgttcatggagattagagaggctcggattgctcttatagtggtacatgaggggaaccattctagcagcatt |
117 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||| | ||||||||| ||||| || ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
24080940 |
caacaccaacattaatcaataacttgacatgttcctagagattagataggctagggttgctcttatagtggtacatgaggggaaccattcttgcagcatt |
24080841 |
T |
|
| Q |
118 |
cagacaaaaattggaaaatgatgatgaaaactgatttgcgaccagaatttcttgattgagacatttccattcatttgaaatcatgtgagcaacatgtgtt |
217 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
24080840 |
gatacaaaaattggaaaatgatgatgaaaacttatttgcaaccagaatttcttgattgagacatttccattcatttgaaatcatgcgagcaacatgtctt |
24080741 |
T |
|
| Q |
218 |
tgcacgtcttcactggaaata |
238 |
Q |
| |
|
||||||||||| | ||||||| |
|
|
| T |
24080740 |
tgcacgtcttccccggaaata |
24080720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold1033
Description:
Target: scaffold1033; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 106 - 1
Alignment:
| Q |
18 |
caacactaacattaatcaatgacttgacatgttcatggagattagagaggctcggattgctcttatagtggtacatgaggggaaccattctagcagcatt |
117 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
106 |
caacaccaacattaatcaatgacttgacatgttcctggagattagagaggcttggattgctcttatagtggtacatgaggggaaccattctagcagcatt |
7 |
T |
|
| Q |
118 |
cagaca |
123 |
Q |
| |
|
||||| |
|
|
| T |
6 |
gagaca |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold1029
Description:
Target: scaffold1029; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 106 - 1
Alignment:
| Q |
18 |
caacactaacattaatcaatgacttgacatgttcatggagattagagaggctcggattgctcttatagtggtacatgaggggaaccattctagcagcatt |
117 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
106 |
caacaccaacattaatcaatgacttgacatgttcctggagattagagaggcttggattgctcttatagtggtacatgaggggaaccattctagcagcatt |
7 |
T |
|
| Q |
118 |
cagaca |
123 |
Q |
| |
|
||||| |
|
|
| T |
6 |
gagaca |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1126 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold1126
Description:
Target: scaffold1126; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 2622 - 2718
Alignment:
| Q |
21 |
cactaacattaatcaatgacttgacatgttcatggagattagagaggctcggattgctcttatagtggtacatgaggggaaccattctagcagcatt |
117 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2622 |
cactagcattaatcaatgacttgacatgttcctggagattagagaggcttggattgctcttatagtggtacatgaggggaaccattctagcagcatt |
2718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 219
Target Start/End: Complemental strand, 2603357 - 2603159
Alignment:
| Q |
24 |
taacattaatcaatgacttgacatgttcatggagattagagaggctcggattgctcttatagtggtacatgaggggaaccattctagcagcattcagaca |
123 |
Q |
| |
|
||||||||| ||||||||||||| | || || ||||| || || || ||||| |||| ||||| |||||||| ||||||||||| ||| |||| || || |
|
|
| T |
2603357 |
taacattaaccaatgacttgacaaggtcttgtagattggaaagacttggattactctggtagtgatacatgagaggaaccattcttgcaacattaaggca |
2603258 |
T |
|
| Q |
124 |
aaaattggaaaatgatgatgaaaact---gatttgcgaccagaatttcttgattgagacatttccattcatttgaaatcatgtgagcaacatgtgtttg |
219 |
Q |
| |
|
||| |||| ||||||||| ||||| |||| | | | |||||||||||||||| ||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
2603257 |
aaatttggtaaatgatgacgaaaaaattggattcggggttatgatttcttgattgagacgtttccattcatttgaaatcatgttagcaacatgtctttg |
2603159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 2600064 - 2600015
Alignment:
| Q |
164 |
atttcttgattgagacatttccattcatttgaaatcatgtgagcaacatg |
213 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
2600064 |
atttcttgtttgagacgtttccattcatttgaaatcatgttagcaacatg |
2600015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 213
Target Start/End: Complemental strand, 2591928 - 2591881
Alignment:
| Q |
166 |
ttcttgattgagacatttccattcatttgaaatcatgtgagcaacatg |
213 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
2591928 |
ttcttgattcagacgtttccattcatttgaaatcatatgagcaacatg |
2591881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0870 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0870
Description:
Target: scaffold0870; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 55 - 4
Alignment:
| Q |
18 |
caacactaacattaatcaatgacttgacatgttcatggagattagagaggct |
69 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
55 |
caacaccaacgttaatcaatgacttgacatgttcctggagattagagaggct |
4 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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