View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2925_low_1 (Length: 387)
Name: NF2925_low_1
Description: NF2925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2925_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 38301137 - 38301386
Alignment:
| Q |
18 |
aagtgttcccattaccaccgtcgcttccgattttgagttttgcatgggctcatgcgtctttaacaagtataaagatcgtatgttgccgatgaatgtggaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38301137 |
aagtgttcccattaccaccgtcgcttccgattttgagttttgcatgggctcacgcgtctttaacaagtataaagatcgtatgttgccgatgaatgtggaa |
38301236 |
T |
|
| Q |
118 |
actagaatgtgtactcgcacctggttgcacaattttgttaacaatggtaatttatggaatttgaatgtaaatagatatgattttattggtttgataacca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38301237 |
actagaatgtgtactcgcacctggttgcacaattttgttaataatggtaatttatggaatttgaatgtaaatagatatgattttattggtttgataacca |
38301336 |
T |
|
| Q |
218 |
ctgttcaattgaattataaacctcttcaattatgatatgtagatggagaa |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38301337 |
ctgttcaattgaattataaacctcttcaattatgatatgtagatggagaa |
38301386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 38309779 - 38310026
Alignment:
| Q |
18 |
aagtgttcccattaccaccgtcgcttccgattttgagttttgcatgggctcatgcgtctttaacaagtataaagatcgtatgttgccgatgaatgtggaa |
117 |
Q |
| |
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|||| ||||||||||||| ||||| || |||||||||||||||||||||||| | || |||||||| |||||||||||||||||||| | ||||||||| |
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| T |
38309779 |
aagttttcccattaccactgtcgcatctgattttgagttttgcatgggctcacgtgtgtttaacaaatataaagatcgtatgttgccaaataatgtggaa |
38309878 |
T |
|
| Q |
118 |
actagaatgtgtactcgcacctggttgcacaattttgttaacaatggtaatttatggaatttgaatgtaaatagatatgattttattggtttgataacca |
217 |
Q |
| |
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|||||||| ||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||| |||| ||||||| ||| |
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| T |
38309879 |
actagaatatgtactcgcacttggttgcacaattttgttggcaatggtaatttatgtaatttgaatgtaaatatatatgatttaattgttttgatagcca |
38309978 |
T |
|
| Q |
218 |
ctgttcaattgaattataaacctcttcaattatgatatgtagatggag |
265 |
Q |
| |
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|||||||||| |||||| | |||| ||||||||||||||||||||||| |
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| T |
38309979 |
ctgttcaatttaattattatcctcctcaattatgatatgtagatggag |
38310026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 18 - 264
Target Start/End: Original strand, 38307037 - 38307277
Alignment:
| Q |
18 |
aagtgttcccattaccaccgtcgcttccgattttgagttttgcatgggctcatgcgtctttaacaagtataaagatcgtatgttgccgatgaatgtggaa |
117 |
Q |
| |
|
|||||||||||||||||| || ||||| |||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38307037 |
aagtgttcccattaccactgtggcttctgattttgaattttgcatgggctcacgcgtgtttaacaagtataaagatcgtatgttgccgatggatgtggaa |
38307136 |
T |
|
| Q |
118 |
actagaatgtgtactcgcacctggttgcacaattttgttaacaatggtaatttatggaatttgaatgtaaatagatatgattttattggtttgataacca |
217 |
Q |
| |
|
|||||||| ||| |||||| ||| || ||||||| |||| |||||||| | || ||||||||||| |||||||| | ||| ||||||||||| |
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|
| T |
38307137 |
actagaatttgtgctcgcagttggctgtacaatttcgttagtgatggtaatctgtgtaatttgaatgt------atatgattctgttgttttgataacca |
38307230 |
T |
|
| Q |
218 |
ctgttcaattgaattataaacctcttcaattatgatatgtagatgga |
264 |
Q |
| |
|
||| |||||| ||| | |||||||||||||||||| |||||||||| |
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|
| T |
38307231 |
ctggtcaattacattgttaacctcttcaattatgatttgtagatgga |
38307277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 38317790 - 38318035
Alignment:
| Q |
18 |
aagtgttcccattaccaccgtcgcttccgattttgagttttgcatgggctcatgcgtctttaacaagtataaagatcgtatgttgccgatgaatgtggaa |
117 |
Q |
| |
|
||||||||||||| |||| || ||||| |||| ||| ||||||||||| ||| | ||||||||||||||| ||||||||| | |||| | |||||||||| |
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|
| T |
38317790 |
aagtgttcccattgccactgttgcttctgattctgaattttgcatgggttcacgtgtctttaacaagtatgaagatcgtacgctgcccacgaatgtggaa |
38317889 |
T |
|
| Q |
118 |
actagaatgtgtactcgcacctggttgcacaattttgttaacaatggtaat---ttatggaatttgaatgtaaatagatatgattttattggtttgataa |
214 |
Q |
| |
|
|||||||| |||||||||| ||||| |||||||||| | | |||||||| |||| ||| |||||||||| |||||||| |||| | |||||| |
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|
| T |
38317890 |
actagaatctgtactcgcagttggttatacaattttgtaagcgatggtaatctactatgttctttaaatgtaaataaatatgattgtattcttctgataa |
38317989 |
T |
|
| Q |
215 |
ccactgttcaattgaattataaacctcttcaattatgatatgtaga |
260 |
Q |
| |
|
||| || |||||| ||||| ||||||||||||| ||||||||||| |
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|
| T |
38317990 |
ccagtggtcaattttattattaacctcttcaattgtgatatgtaga |
38318035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 38314380 - 38314630
Alignment:
| Q |
18 |
aagtgttcccattaccaccgtcgcttccgattttgagttttgcatgggctcatgcgtctttaacaagtataaagatcgtatgttgccgatgaatgtggaa |
117 |
Q |
| |
|
||||||||||||| |||| || ||||| |||||||| ||||||||||||||| | || || ||||||||||||||||| ||||| || ||| |||||||| |
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|
| T |
38314380 |
aagtgttcccattgccacagtggcttctgattttgaattttgcatgggctcacgtgtgttaaacaagtataaagatcgcatgttaccaatggatgtggaa |
38314479 |
T |
|
| Q |
118 |
actagaatgtgtactcgcacctggttgcacaattttgttaacaatggtaatttatggaatttgaatgtaaatagatatgattttattggtttgataacca |
217 |
Q |
| |
|
|||||||| || ||||||| ||| || |||||||||||| |||||||| ||| ||||| ||||| |||| | || | | ||||| ||||||||||| |
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| T |
38314480 |
actagaatttgcactcgcagttggctgtacaattttgttagtgatggtaatctatctaatttaaatgtgaatataaataagtgtattgttttgataacca |
38314579 |
T |
|
| Q |
218 |
-ctgttcaattgaattataaacctcttcaattatgatatgtagatggagaa |
267 |
Q |
| |
|
||| |||| | |||| || |||||| |||||||||||||||||||||| |
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|
| T |
38314580 |
cctgggtaatttagttattaatctcttcgattatgatatgtagatggagaa |
38314630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 38321879 - 38322128
Alignment:
| Q |
18 |
aagtgttcccattaccaccgtcgcttccgattttgagttttgcatgggctcatgcgtctttaacaagtataaagatcgtatgttgccgatgaatgtggaa |
117 |
Q |
| |
|
|||||||||| ||| ||| ||||||| ||||| || |||||||| |||| ||| |||||||||||||||||||||||||| ||||||||| |||| |
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|
| T |
38321879 |
aagtgttcccgttaacactatcgcttctgatttggatttttgcataggcttgcacgtttttaacaagtataaagatcgtatgttaccgatgaatttggat |
38321978 |
T |
|
| Q |
118 |
actagaatgtgtactcgcacctggttgcacaattttgttaacaatggtaatttatggaatttgaatgtaaatagatatgattttattggtttgataacca |
217 |
Q |
| |
|
||||| | |||||||||| |||||| ||||||||||| | |||||||| || | ||||| | |||||||| |||||||| ||||| |||| |||| | |
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|
| T |
38321979 |
gctagattttgtactcgcaattggttgtacaattttgttcgcgatggtaatctacgtaatttaagtgtaaatacatatgattgtattgttttggtaacta |
38322078 |
T |
|
| Q |
218 |
ctgttcaattgaattataaacctcttcaattatgatatgtagatggagaa |
267 |
Q |
| |
|
| ||| || |||||| ||||| |||||||||||||||||| ||||||| |
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|
| T |
38322079 |
gttgtcactttaattattaaccttttcaattatgatatgtagttggagaa |
38322128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 38326591 - 38326841
Alignment:
| Q |
18 |
aagtgttcccattaccaccgtcgcttccgattttgagttttgcatgggctcatgcgtctttaacaagtataaagatcgtatgttgccgatgaatgtggaa |
117 |
Q |
| |
|
||||||||||||| |||| ||||| || ||||| || ||||||||||| || |||| ||| | ||||||||||| | |||| |||| |||||||||||| |
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|
| T |
38326591 |
aagtgttcccattgccactgtcgcatctgatttggaattttgcatgggtgcacgcgtatttgaaaagtataaagaccttatgctgcctatgaatgtggaa |
38326690 |
T |
|
| Q |
118 |
actagaatgtgtactcgcacctggttgcacaattttgttaacaatggtaatttatg------gaatttgaatgtaaatagatatgattttattggtttga |
211 |
Q |
| |
|
| ||||| |||||| ||| |||||| |||||||||| | |||||||| |||||| ||||| |||||| ||| || | | | | ||| ||||| |
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|
| T |
38326691 |
gccagaatctgtacttgcagttggttgtacaattttgtcagcaatggtactttatgtaatttaaattttaatgtatatatatgtaactgtgttgttttga |
38326790 |
T |
|
| Q |
212 |
taaccactgttcaattgaattataaacctcttcaattatgatatgtagatg |
262 |
Q |
| |
|
||||||| | || ||| |||||| ||||||||||||| ||||||||||||| |
|
|
| T |
38326791 |
taaccacaggtctatttaattattaacctcttcaattttgatatgtagatg |
38326841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 331 - 379
Target Start/End: Original strand, 38301450 - 38301498
Alignment:
| Q |
331 |
gaatcggataactcgtcaaattgttatgatttcagtgatggtgatgatg |
379 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38301450 |
gaattggataactcgtcaaatggttatgatttcagtgatggtgatgatg |
38301498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 38849546 - 38849411
Alignment:
| Q |
18 |
aagtgttcccattaccaccgtcgcttccgattttgagttttgcatgggctcatgcgtctttaacaagtataaagatcgtatgttgccgatgaatgtggaa |
117 |
Q |
| |
|
||||||||||||| || | || ||||| |||| ||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38849546 |
aagtgttcccattgccgctgtagcttctgattctgaattttgcatgggctcacgtgtctttaacaagtataaagatcgtatgttgccgatgaatgtggaa |
38849447 |
T |
|
| Q |
118 |
actagaatgtgtactcgcacctggttgcacaatttt |
153 |
Q |
| |
|
||||||| |||||||||| |||||| |||||||| |
|
|
| T |
38849446 |
gctagaatttgtactcgcagttggttgtacaatttt |
38849411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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