View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2926_high_1 (Length: 1376)
Name: NF2926_high_1
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2926_high_1 |
 | |
|
| [»] scaffold0341 (7 HSPs) |
| | |
|
| [»] scaffold0090 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 1239; Significance: 0; HSPs: 36)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 1239; E-Value: 0
Query Start/End: Original strand, 1 - 1353
Target Start/End: Complemental strand, 6498662 - 6497301
Alignment:
| Q |
1 |
ctgcatctatttaagaataaggaagccaaagaaaacgtttgaaggtgattaagctgaaacattgatataccgtgacttaagtatttcatatcacatataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6498662 |
ctgcatctatttaagaataaggaagccaaagaaaacgtttgaaggtgattaagctgaaacattgatataccgtgacttaagtatttcatatcacatataa |
6498563 |
T |
|
| Q |
101 |
caatttgtttacctattcatggtagaaattcaagaagaagaagatgatgaagaagataaaattgaaagtcctgagccactacaactcaacttcaacacca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6498562 |
caatttgtttacctattcatggtagaaattcaagaagaagaagatgatgaagaagataaaattgaaagtcctgagccactacaactcaacttcaacacca |
6498463 |
T |
|
| Q |
201 |
tacgtaatgctacaaatgacttctcgcattcaaatcaacttggagaaggcggattcggagttgtttacaaagtaaaataacactattaaacatcacttca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6498462 |
tacgtaatgctacaaatgacttctcgcattctaatcaacttggagaaggcggattcggagttgtttacaaagtaaaataacactattaaacatcacttca |
6498363 |
T |
|
| Q |
301 |
ttaattaaaatatgatatactctaatacttgttttgaaaa-cttatcgctcctaaataatatatatattttcagggtaggctatccaatggacaagagat |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6498362 |
ttaattaaaatatgatatactctaatacttgttttgaaaaacttatcactcctaaataatatatat--tttcagggtaggctatccaatggacaagagat |
6498265 |
T |
|
| Q |
400 |
tgctgtcaaaaggttgtcaatgagttcgggacaaggagattcggagtttaagaatgaggtacttttggtggctaagcttcaacaccgaaatttagttaga |
499 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6498264 |
tgctgttaaaaggttgtcaatgagttcgggacaaggagattcggagtttaagaatgaggtacttttggtggctaagcttcaacaccgaaatttagttaga |
6498165 |
T |
|
| Q |
500 |
ctactcggtttctcactagaaggaagagaaagagtacttgtatatgaatttgttcaaaacaaaagtctcgattatttcatttttggtaagttttaatatc |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6498164 |
ctactcggtttctcactagaaggaagagaaagagtacttgtatatgaatttgttcaaaacaaaagtctcgattatttcatttttggtaagttttaatatc |
6498065 |
T |
|
| Q |
600 |
tattgaagtgtataatatctatactactttagttcggttaaatgctaagctcgttaattattgtacaatattcaaaattaattggtatgttatatgcaga |
699 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6498064 |
tattgaagtgtataatatctatactactttagttcggttaaatactaagctcgtaaattattgtacaatattcaaaattaattggtatgttatatgcaga |
6497965 |
T |
|
| Q |
700 |
tcgagttaagaaagcgcaattaaattgggaaatgcgctacaaaattattttaggtattgctcgaggcattctttaccttcacgaggattctcgactgcgc |
799 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6497964 |
tcgagttaagaaagcgcaattaaattgggaaatgcgctacaaaatcattttaggtattgctcgaggcattctttaccttcacgaggattctcgactgcgc |
6497865 |
T |
|
| Q |
800 |
attattcatcgtgatctcaaagcaagtaacattctcttagatgaagaaatgaatcctaagatatctgattttggcatggcaagactatttggtgtggacc |
899 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6497864 |
attattcatcgtgatctcaaagcaagtaacattctcttagatgaagaaatgaatcctaagatatctgattttggcatggcaagactatttggtgtggacc |
6497765 |
T |
|
| Q |
900 |
aaacacaggaaaacacaaaaagaattgtgggaacctagtaagtattnnnnnnnnnngtatatgatgttattgagattatatcaaaaagcttagcaaatgc |
999 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6497764 |
aaacacaggaaaacacaaaaagaattgtgggaacctagtaagtattcaaaaaaaaagtatatgatgttattgatattatatcaaaaagcttagcaaatgc |
6497665 |
T |
|
| Q |
1000 |
aaattgatagataattgaac----atatacaagattgtgaacaaaactttctttattgaggctacttgtccaaattgttttgtagtggatatatggcacc |
1095 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6497664 |
aaattgatagataattgaacatatatatacaagattgtgaacaaaactttctttattgaggctacttgtccaaattgttttgtagtggatatatggcacc |
6497565 |
T |
|
| Q |
1096 |
tgaatatgctatgcacggacaattttcagtgaagtcagatgtattcagtttcggtatattggttcttgaaatcgtaagtggttcaaaaaacagtggcatt |
1195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6497564 |
tgaatatgctatgcacggacaattttcagtgaagtcggatgtattcagtttcggtatattggttcttgaaatcgtaagtggttcaaaaaacagtggcatt |
6497465 |
T |
|
| Q |
1196 |
cgcgatgaggagaatactgagtatctatcgagctttgtaagtcatacttttcat------gtcatcatatatttcatgtagaagtgtattatatctaacc |
1289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6497464 |
cgcgatgaggagaatactgagtatctatcgagctttgtaagtcatactttttatgtcatcgtcatcatatatttcatgtagaagtgtattatatctaacc |
6497365 |
T |
|
| Q |
1290 |
tagtattttatttgcgtttggacaaatttgtgcaggcatggaggaattggaaggagggaactgc |
1353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6497364 |
tagtattttatttgcgtttggacaaatttgtgcaggcatggaggaattggaaggagggaactgc |
6497301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 6e-90
Query Start/End: Original strand, 189 - 593
Target Start/End: Complemental strand, 6503794 - 6503390
Alignment:
| Q |
189 |
acttcaacaccatacgtaatgctacaaatgacttctcgcattcaaatcaacttggagaaggcggattcggagttgtttacaaagtaaaataacactatta |
288 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||| |||| || |||||||| |||||||||| || | |||||||||||||||||||| | |||| |
|
|
| T |
6503794 |
acttcaacaccatacgtattgctacaaatgatttctcagattctgataaacttggaaaaggcggatttggggctgtttacaaagtaaaataacgccatta |
6503695 |
T |
|
| Q |
289 |
aacatcacttcattaattaaaatatgatatactctaatacttgttttgaaaacttatcgctcctaaataatatatatattttcagggtaggctatccaat |
388 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||| || ||||| | ||||||||||| | |||||| ||| ||||||||||||||||| | |||| |
|
|
| T |
6503694 |
aacactgctttattaattaaaatatgatatactcttatgattgttataaaaacttatcgttattaaatatattatttattttcagggtaggctcttcaat |
6503595 |
T |
|
| Q |
389 |
ggacaagagattgctgtcaaaaggttgtcaatgagttcgggacaaggagattcggagtttaagaatgaggtacttttggtggctaagcttcaacaccgaa |
488 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||| ||| |||||||||||||| |||||||||||||| || |||| || ||||| ||||||||| ||| |
|
|
| T |
6503594 |
ggacaagaggttgctgtcaaaaggttatcaatgaattctggacaaggagattcagagtttaagaatgaagtgtttttagttgctaaacttcaacacagaa |
6503495 |
T |
|
| Q |
489 |
atttagttagactactcggtttctcactagaaggaagagaaagagtacttgtatatgaatttgttcaaaacaaaagtctcgattatttcatttttggtaa |
588 |
Q |
| |
|
|| |||||||| |||||||||| | |||||||||||||||||| | ||||||||||| |||||| || |||||||| ||||| || |||||||||| |
|
|
| T |
6503494 |
atctagttagattactcggtttttgcctagaaggaagagaaagacttcttgtatatgagtttgtttgtaataaaagtcttgattactttatttttggtag |
6503395 |
T |
|
| Q |
589 |
gtttt |
593 |
Q |
| |
|
||||| |
|
|
| T |
6503394 |
gtttt |
6503390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 166; E-Value: 3e-88
Query Start/End: Original strand, 189 - 600
Target Start/End: Complemental strand, 6511417 - 6511003
Alignment:
| Q |
189 |
acttcaacaccatacgtaatgctacaaatgacttctcgcattcaaatcaacttggagaaggcggattcggagttgtttacaaagtaaaataacactatta |
288 |
Q |
| |
|
||||||||||||| |||| |||||||||||| ||||| |||| ||| |||||||| |||| ||||| || ||||||||||||||||||| |||||||| |
|
|
| T |
6511417 |
acttcaacaccatgcgtattgctacaaatgatttctcagattctaataaacttggaaaaggaggatttgggtttgtttacaaagtaaaatagcactatta |
6511318 |
T |
|
| Q |
289 |
aacatcacttcattaattaaa-----atatgatatactctaatacttgttttgaaaacttatcgctcctaaataatatatatattttcagggtaggctat |
383 |
Q |
| |
|
||||| |||| |||||||||| ||||| |||||||| | ||||||| | ||| |||||| | ||||||| ||| ||| |||||||||||| | | |
|
|
| T |
6511317 |
aacattactttattaattaaattaaaatatgttatactcttacacttgttattaaagcttatcattactaaatattatttat--tttcagggtaggttct |
6511220 |
T |
|
| Q |
384 |
ccaatggacaagagattgctgtcaaaaggttgtcaatgagttcgggacaaggagattcggagtttaagaatgaggtacttttggtggctaagcttcaaca |
483 |
Q |
| |
|
|||| || |||||| |||||||||||||||| ||||||| ||| |||||||||||| |||||||||||||| ||| |||| |||||||| |||||||| |
|
|
| T |
6511219 |
ccaacgggcaagaggttgctgtcaaaaggttatcaatgaattccggacaaggagatctagagtttaagaatgaagtatttttagtggctaaacttcaaca |
6511120 |
T |
|
| Q |
484 |
ccgaaatttagttagactactcggtttctcactagaaggaagagaaagagtacttgtatatgaatttgttcaaaacaaaagtctcgattatttcattttt |
583 |
Q |
| |
|
|||||||||||| ||| |||||||||||| |||||||||||||||||| ||||| ||||||| |||||||| || |||||||| ||||| || |||||| |
|
|
| T |
6511119 |
ccgaaatttagtaagattactcggtttctgcctagaaggaagagaaagactacttatatatgagtttgttcataataaaagtcttgattactttattttt |
6511020 |
T |
|
| Q |
584 |
ggtaagttttaatatct |
600 |
Q |
| |
|
|||| |||||| ||||| |
|
|
| T |
6511019 |
ggtaggttttattatct |
6511003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 165; E-Value: 1e-87
Query Start/End: Original strand, 693 - 945
Target Start/End: Complemental strand, 6515315 - 6515063
Alignment:
| Q |
693 |
atgcagatcgagttaagaaagcgcaattaaattgggaaatgcgctacaaaattattttaggtattgctcgaggcattctttaccttcacgaggattctcg |
792 |
Q |
| |
|
||||||||| || |||||||| |||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
6515315 |
atgcagatcaagcaaagaaagcacaattaaattgggaaaggcgctacacaatcattttaggtattgctcgaggcattctttacctccatgaggattctcg |
6515216 |
T |
|
| Q |
793 |
actgcgcattattcatcgtgatctcaaagcaagtaacattctcttagatgaagaaatgaatcctaagatatctgattttggcatggcaagactatttggt |
892 |
Q |
| |
|
| |||| ||||||||||||||||||||||||| || |||||||||||| || ||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
6515215 |
agtgcgtgttattcatcgtgatctcaaagcaagcaatattctcttagataaacggatgaatcctaagatagctgattttggcatggcaagactttttggt |
6515116 |
T |
|
| Q |
893 |
gtggaccaaacacaggaaaacacaaaaagaattgtgggaacctagtaagtatt |
945 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6515115 |
gtggaccaaacccaggaaaacacaaatagaattgtgggaacctagtaagtatt |
6515063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 161; E-Value: 3e-85
Query Start/End: Original strand, 693 - 945
Target Start/End: Complemental strand, 6510925 - 6510673
Alignment:
| Q |
693 |
atgcagatcgagttaagaaagcgcaattaaattgggaaatgcgctacaaaattattttaggtattgctcgaggcattctttaccttcacgaggattctcg |
792 |
Q |
| |
|
||||||||| || || ||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6510925 |
atgcagatcaagcaaaaaaagcgcaattaaattggggaaggcgctacaaaatcattttaggtattgctcgaggcattctttaccttcacgaggattctcg |
6510826 |
T |
|
| Q |
793 |
actgcgcattattcatcgtgatctcaaagcaagtaacattctcttagatgaagaaatgaatcctaagatatctgattttggcatggcaagactatttggt |
892 |
Q |
| |
|
||| || ||||||||||||||||||||||||| || |||||||| |||||||| ||||||||||||||| ||||||||||||||||||| || ||| || |
|
|
| T |
6510825 |
actacgtgttattcatcgtgatctcaaagcaagcaatattctcttggatgaagagatgaatcctaagatagctgattttggcatggcaaggctttttagt |
6510726 |
T |
|
| Q |
893 |
gtggaccaaacacaggaaaacacaaaaagaattgtgggaacctagtaagtatt |
945 |
Q |
| |
|
| |||||||| |||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
6510725 |
attgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagtatt |
6510673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 143; E-Value: 2e-74
Query Start/End: Original strand, 683 - 941
Target Start/End: Complemental strand, 6503315 - 6503057
Alignment:
| Q |
683 |
ggtatgttatatgcagatcgagttaagaaagcgcaattaaattgggaaatgcgctacaaaattattttaggtattgctcgaggcattctttaccttcacg |
782 |
Q |
| |
|
||||||| | ||||||||| || |||| ||||||||||||||||| || ||||||| ||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6503315 |
ggtatgtcaaatgcagatcaagcaaagagagcgcaattaaattggggaaagcgctacctaatcattttaggtattgctcgaggcattctataccttcacc |
6503216 |
T |
|
| Q |
783 |
aggattctcgactgcgcattattcatcgtgatctcaaagcaagtaacattctcttagatgaagaaatgaatcctaagatatctgattttggcatggcaag |
882 |
Q |
| |
|
||||||||||| | || |||||||| | ||||||||||||||||| |||||||| |||||| | ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6503215 |
aggattctcgatttcgtgttattcatagagatctcaaagcaagtaatattctcttggatgaacatatgaatcctaagatagctgattttggcatggcaag |
6503116 |
T |
|
| Q |
883 |
actatttggtgtggaccaaacacaggaaaacacaaaaagaattgtgggaacctagtaag |
941 |
Q |
| |
|
||| |||||||| |||||||| |||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
6503115 |
actttttggtgttgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaag |
6503057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 133; E-Value: 2e-68
Query Start/End: Original strand, 740 - 944
Target Start/End: Original strand, 6525236 - 6525440
Alignment:
| Q |
740 |
aaaattattttaggtattgctcgaggcattctttaccttcacgaggattctcgactgcgcattattcatcgtgatctcaaagcaagtaacattctcttag |
839 |
Q |
| |
|
||||| ||| |||||| ||||||||| |||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
6525236 |
aaaatcattgtaggtactgctcgaggaattctttaccttcatgaggattctcggctgcgtattattcatcgtgatctcaaagcaagcaatattctcttag |
6525335 |
T |
|
| Q |
840 |
atgaagaaatgaatcctaagatatctgattttggcatggcaagactatttggtgtggaccaaacacaggaaaacacaaaaagaattgtgggaacctagta |
939 |
Q |
| |
|
||||||| ||||||||||||||| | |||||||||||||| ||||| |||| |||||||||||| |||||||| ||||| |||||||||||||||||||| |
|
|
| T |
6525336 |
atgaagagatgaatcctaagatagcagattttggcatggctagactgtttgatgtggaccaaactcaggaaaatacaaacagaattgtgggaacctagta |
6525435 |
T |
|
| Q |
940 |
agtat |
944 |
Q |
| |
|
||||| |
|
|
| T |
6525436 |
agtat |
6525440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 120; E-Value: 1e-60
Query Start/End: Original strand, 1069 - 1340
Target Start/End: Complemental strand, 6510574 - 6510300
Alignment:
| Q |
1069 |
attgttttgtagtggatatatggcacctgaatatgctatgcacggacaattttcagtgaagtcagatgtattcagtttcggtatattggttcttgaaatc |
1168 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||| ||||| |||||||| || || ||||| || ||||| |||||||||||| | ||||| |
|
|
| T |
6510574 |
attgttttgtagtggatatatggcacctgagtatgtaatgcaaggacagttttcagtaaaatccgatgtctttagttttggtatattggttttagaaatt |
6510475 |
T |
|
| Q |
1169 |
gtaagtggttcaaaaaacagtggcattcgcgatgaggagaatactgagtatctatcgagctttgtaagtcatacttttcatgtcatcatatatttcatg- |
1267 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||| ||||||||| || ||||| || ||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
6510474 |
gtaagtggtgcaaaaaacagtggcattcgtgatggggagaatacagaatatctctcaagctttgtaagtcatacttttcatgtcgtcatatctttcatgt |
6510375 |
T |
|
| Q |
1268 |
-tagaagtg-tattatatctaacctagtattttatttgcgtttggacaaatttgtgcaggcatggaggaattgga |
1340 |
Q |
| |
|
|||||||| |||||||||||| || | ||||||| ||||| |||||||||||||||||||| ||||||| |
|
|
| T |
6510374 |
ttagaagtgaaattatatctaacaaagagtagtatttgcatttgggtaaatttgtgcaggcatggagaaattgga |
6510300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 109; E-Value: 4e-54
Query Start/End: Original strand, 362 - 598
Target Start/End: Original strand, 6524858 - 6525094
Alignment:
| Q |
362 |
atatattttcagggtaggctatccaatggacaagagattgctgtcaaaaggttgtcaatgagttcgggacaaggagattcggagtttaagaatgaggtac |
461 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||| ||||||||||||||| | | ||| || |||||||||| || ||||||||||| ||| |
|
|
| T |
6524858 |
atatattttcagggtagactccccaatggacaagagattggtgtcaaaaggttgtcgagggattctggccaaggagatttagaatttaagaatgaagtag |
6524957 |
T |
|
| Q |
462 |
ttttggtggctaagcttcaacaccgaaatttagttagactactcggtttctcactagaaggaagagaaagagtacttgtatatgaatttgttcaaaacaa |
561 |
Q |
| |
|
|||| |||||||| |||||||| ||||| |||||||| ||||| ||||||| ||||||||||||||||| |||||||||||||||||||||| || || |
|
|
| T |
6524958 |
ttttagtggctaaacttcaacatcgaaacttagttaggctacttggtttctgtatagaaggaagagaaagactacttgtatatgaatttgttcagaataa |
6525057 |
T |
|
| Q |
562 |
aagtctcgattatttcatttttggtaagttttaatat |
598 |
Q |
| |
|
|| |||||||| ||| ||||||||| |||||||||| |
|
|
| T |
6525058 |
gagcctcgattacttcctttttggtaggttttaatat |
6525094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 100; E-Value: 8e-49
Query Start/End: Original strand, 360 - 599
Target Start/End: Complemental strand, 6515666 - 6515427
Alignment:
| Q |
360 |
atatatattttcagggtaggctatccaatggacaagagattgctgtcaaaaggttgtcaatgagttcgggacaaggagattcggagtttaagaatgaggt |
459 |
Q |
| |
|
|||| |||||| |||||||||| || ||||||| ||| || ||| |||||||||| ||||||| ||| |||||||||||| ||||||||||||||||| |
|
|
| T |
6515666 |
atatttatttttagggtaggctctctaatggactagaaatcgctatcaaaaggttatcaatgaattctggacaaggagatctagagtttaagaatgaggt |
6515567 |
T |
|
| Q |
460 |
acttttggtggctaagcttcaacaccgaaatttagttagactactcggtttctcactagaaggaagagaaagagtacttgtatatgaatttgttcaaaac |
559 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||| |||||||||||| |||||||| || |||||| ||||| |||| || |||||||| || |
|
|
| T |
6515566 |
gtttttcctggctaaacttcaacaccgaaatttagttagattactcggtttctgcctagaagggagtgaaagactacttatatacgagtttgttcataat |
6515467 |
T |
|
| Q |
560 |
aaaagtctcgattatttcatttttggtaagttttaatatc |
599 |
Q |
| |
|
|||||||| ||||| || |||||||||| ||||| ||||| |
|
|
| T |
6515466 |
aaaagtcttgattactttatttttggtaggttttgatatc |
6515427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 1069 - 1246
Target Start/End: Complemental strand, 6502950 - 6502773
Alignment:
| Q |
1069 |
attgttttgtagtggatatatggcacctgaatatgctatgcacggacaattttcagtgaagtcagatgtattcagtttcggtatattggttcttgaaatc |
1168 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||| ||||||||||||||||| || || |||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
6502950 |
attgttttgtagcggatatatggcacctgagtatgtaatgcacggacaattttcggtaaaatcagatgtcttcagttttggtatattggttcttgaaatt |
6502851 |
T |
|
| Q |
1169 |
gtaagtggttcaaaaaacagtggcattcgcgatgaggagaatactgagtatctatcgagctttgtaagtcatactttt |
1246 |
Q |
| |
|
||||||||| | ||||| ||| ||||||| |||| ||||||||| || ||||| || |||||||||||||||| |||| |
|
|
| T |
6502850 |
gtaagtggtgctaaaaatagtagcattcgtgatggggagaatacagaatatctctcaagctttgtaagtcataatttt |
6502773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 84; E-Value: 3e-39
Query Start/End: Original strand, 388 - 587
Target Start/End: Complemental strand, 47744589 - 47744390
Alignment:
| Q |
388 |
tggacaagagattgctgtcaaaaggttgtcaatgagttcgggacaaggagattcggagtttaagaatgaggtacttttggtggctaagcttcaacaccga |
487 |
Q |
| |
|
|||||||| |||||| |||||||||||||||| | ||| |||||||| ||| || ||||||||||| || ||||| || |||||||||||||| ||| |
|
|
| T |
47744589 |
tggacaagtgattgcggtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcga |
47744490 |
T |
|
| Q |
488 |
aatttagttagactactcggtttctcactagaaggaagagaaagagtacttgtatatgaatttgttcaaaacaaaagtctcgattatttcatttttggta |
587 |
Q |
| |
|
||||||||||||||||| ||||| | |||||||||||||||||| | ||||| ||||||| ||||| ||| |||||||| |||||||| || ||||||| |
|
|
| T |
47744489 |
aatttagttagactacttggtttttgtctagaaggaagagaaagattgcttgtctatgaatatgttccaaataaaagtcttgattattttatatttggta |
47744390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 79; E-Value: 3e-36
Query Start/End: Original strand, 707 - 945
Target Start/End: Complemental strand, 47716540 - 47716302
Alignment:
| Q |
707 |
aagaaagcgcaattaaattgggaaatgcgctacaaaattattttaggtattgctcgaggcattctttaccttcacgaggattctcgactgcgcattattc |
806 |
Q |
| |
|
|||||||| |||||| | ||||||| |||||||||||| ||| |||||||||| ||||| ||||||||||||| ||||||||| ||| || ||||| | |
|
|
| T |
47716540 |
aagaaagcacaattagactgggaaaggcgctacaaaatcattggaggtattgctagaggccttctttaccttcatcaggattctcaacttcgtattatac |
47716441 |
T |
|
| Q |
807 |
atcgtgatctcaaagcaagtaacattctcttagatgaagaaatgaatcctaagatatctgattttggcatggcaagactatttggtgtggaccaaacaca |
906 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||| ||| || |||||||||| ||||| |||||||| || || |||||| || ||| || ||||| || |
|
|
| T |
47716440 |
atcgtgatcttaaagcgggtaacattctcttagacgaaaaattgaatcctaaaatatcagattttggtatcgccagactacttcttgtcgatcaaactca |
47716341 |
T |
|
| Q |
907 |
ggaaaacacaaaaagaattgtgggaacctagtaagtatt |
945 |
Q |
| |
|
| ||| ||||| | ||| || ||||| ||||||||||| |
|
|
| T |
47716340 |
agtaaatacaaataaaatcgttggaacatagtaagtatt |
47716302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 79; E-Value: 3e-36
Query Start/End: Original strand, 723 - 885
Target Start/End: Complemental strand, 47758671 - 47758509
Alignment:
| Q |
723 |
attgggaaatgcgctacaaaattattttaggtattgctcgaggcattctttaccttcacgaggattctcgactgcgcattattcatcgtgatctcaaagc |
822 |
Q |
| |
|
||||||||| |||||| ||||| ||| |||||||||| ||||| |||||||||||||||||||||||| ||| || ||||| ||||||||||| ||||| |
|
|
| T |
47758671 |
attgggaaaggcgctataaaatcattggaggtattgctagaggccttctttaccttcacgaggattctcaacttcgtattatacatcgtgatcttaaagc |
47758572 |
T |
|
| Q |
823 |
aagtaacattctcttagatgaagaaatgaatcctaagatatctgattttggcatggcaagact |
885 |
Q |
| |
|
||||||||||||||||| ||| | |||||||||| ||||| |||||||| ||||| ||||| |
|
|
| T |
47758571 |
gagtaacattctcttagacgaaaagttgaatcctaaaatatcagattttggaatggccagact |
47758509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 76; E-Value: 2e-34
Query Start/End: Original strand, 723 - 886
Target Start/End: Complemental strand, 47711773 - 47711610
Alignment:
| Q |
723 |
attgggaaatgcgctacaaaattattttaggtattgctcgaggcattctttaccttcacgaggattctcgactgcgcattattcatcgtgatctcaaagc |
822 |
Q |
| |
|
||||||||| |||||||||||| ||| |||||| ||| ||||| ||||||||||||| |||||||||| ||| || ||||| ||||||||||| ||||| |
|
|
| T |
47711773 |
attgggaaaggcgctacaaaatcattggaggtatagctagaggccttctttaccttcatgaggattctcaacttcgtattatacatcgtgatcttaaagc |
47711674 |
T |
|
| Q |
823 |
aagtaacattctcttagatgaagaaatgaatcctaagatatctgattttggcatggcaagacta |
886 |
Q |
| |
|
||||||||||||||| |||||| | |||||||||| ||||| || |||||||| || |||||| |
|
|
| T |
47711673 |
aagtaacattctcttggatgaaaagttgaatcctaaaatatcagactttggcatagccagacta |
47711610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 76; E-Value: 2e-34
Query Start/End: Original strand, 388 - 587
Target Start/End: Complemental strand, 47712074 - 47711875
Alignment:
| Q |
388 |
tggacaagagattgctgtcaaaaggttgtcaatgagttcgggacaaggagattcggagtttaagaatgaggtacttttggtggctaagcttcaacaccga |
487 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| | ||| |||||||| ||| || ||||||||||| || ||||| || |||||||||||||| ||| |
|
|
| T |
47712074 |
tggacaagtcattgcagtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcga |
47711975 |
T |
|
| Q |
488 |
aatttagttagactactcggtttctcactagaaggaagagaaagagtacttgtatatgaatttgttcaaaacaaaagtctcgattatttcatttttggta |
587 |
Q |
| |
|
||||||||||||||||| ||||| | |||||||||||||||||| | ||| | ||||||||||||| || |||||||| |||||||| || ||||||| |
|
|
| T |
47711974 |
aatttagttagactacttggtttttgtctagaaggaagagaaagattgcttatctatgaatttgttccgaataaaagtcttgattattttatatttggta |
47711875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 1064 - 1268
Target Start/End: Complemental strand, 6514978 - 6514774
Alignment:
| Q |
1064 |
tccaaattgttttgtagtggatatatggcacctgaatatgctatgcacggacaattttcagtgaagtcagatgtattcagtttcggtatattggttcttg |
1163 |
Q |
| |
|
|||| |||||| |||||||| ||||||||||| || ||||| | ||| |||||||||||| || |||||||| || ||||| |||||||| ||||||| |
|
|
| T |
6514978 |
tccatattgttatgtagtgggtatatggcaccagagtatgcgaggcatggacaattttcaacaaaatcagatgtctttagttttggtatattagttcttg |
6514879 |
T |
|
| Q |
1164 |
aaatcgtaagtggttcaaaaaacagtggcattcgcgatgaggagaatactgagtatctatcgagctttgtaagtcatacttttcatgtcatcatatattt |
1263 |
Q |
| |
|
|||| ||||||||| ||||||| ||| ||| || |||| ||||||||| || ||||| ||||||||||||||||||| || ||||| ||||||| ||| |
|
|
| T |
6514878 |
aaattgtaagtggtacaaaaaatagttacatccgtgatggggagaatacggaatatctctcgagctttgtaagtcataattgtcatgcaatcatatcttt |
6514779 |
T |
|
| Q |
1264 |
catgt |
1268 |
Q |
| |
|
|||| |
|
|
| T |
6514778 |
tatgt |
6514774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 189 - 304
Target Start/End: Complemental strand, 6516016 - 6515901
Alignment:
| Q |
189 |
acttcaacaccatacgtaatgctacaaatgacttctcgcattcaaatcaacttggagaaggcggattcggagttgtttacaaagtaaaataacactatta |
288 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||| |||| || |||||||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6516016 |
acttcaacaccatacgtattgctacaaatgatttctcagattctgataaacttggacaaggaggattcggagttgtttacaaagtaaaataacactatta |
6515917 |
T |
|
| Q |
289 |
aacatcacttcattaa |
304 |
Q |
| |
|
||||| |||| ||||| |
|
|
| T |
6515916 |
aacattactttattaa |
6515901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 388 - 587
Target Start/End: Complemental strand, 47716825 - 47716626
Alignment:
| Q |
388 |
tggacaagagattgctgtcaaaaggttgtcaatgagttcgggacaaggagattcggagtttaagaatgaggtacttttggtggctaagcttcaacaccga |
487 |
Q |
| |
|
|||||||| |||||| ||||||||||||||| | ||| |||||||| ||| || ||||||||||| || ||||| || |||||||||||||| ||| |
|
|
| T |
47716825 |
tggacaagtgattgcgatcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcga |
47716726 |
T |
|
| Q |
488 |
aatttagttagactactcggtttctcactagaaggaagagaaagagtacttgtatatgaatttgttcaaaacaaaagtctcgattatttcatttttggta |
587 |
Q |
| |
|
||||||||| ||||||| ||||| | |||||||||||||||||| | ||| | ||||||||||||| || |||||||| |||||||| || ||||||| |
|
|
| T |
47716725 |
aatttagtttgactacttggtttttgtctagaaggaagagaaagattgcttttctatgaatttgttcctaataaaagtcttgattattttatatttggta |
47716626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #20
Raw Score: 67; E-Value: 4e-29
Query Start/End: Original strand, 709 - 883
Target Start/End: Original strand, 47770897 - 47771071
Alignment:
| Q |
709 |
gaaagcgcaattaaattgggaaatgcgctacaaaattattttaggtattgctcgaggcattctttaccttcacgaggattctcgactgcgcattattcat |
808 |
Q |
| |
|
|||||| ||| | |||||| ||| ||||||| | ||||| |||||||| |||||| ||||||| ||||| ||||||||||| || || ||||| || |
|
|
| T |
47770897 |
gaaagcacaactgaattggcaaaagcgctacgatattataagaggtattgttcgaggtcttctttatcttcatgaggattctcgcctacgaattatacac |
47770996 |
T |
|
| Q |
809 |
cgtgatctcaaagcaagtaacattctcttagatgaagaaatgaatcctaagatatctgattttggcatggcaaga |
883 |
Q |
| |
|
|||||| |||||||||| |||||||||||||| || || |||||||||||||||||||||||||| |||||||| |
|
|
| T |
47770997 |
cgtgatatcaaagcaagcaacattctcttagacgatgagatgaatcctaagatatctgattttggattggcaaga |
47771071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #21
Raw Score: 64; E-Value: 3e-27
Query Start/End: Original strand, 723 - 886
Target Start/End: Complemental strand, 47744288 - 47744125
Alignment:
| Q |
723 |
attgggaaatgcgctacaaaattattttaggtattgctcgaggcattctttaccttcacgaggattctcgactgcgcattattcatcgtgatctcaaagc |
822 |
Q |
| |
|
||||||||| |||||||||||| ||| ||| ||||| |||| ||||||||||||| ||||||||| ||| || ||||| ||||||||||| ||||| |
|
|
| T |
47744288 |
attgggaaaggcgctacaaaatcattggaggaattgcaagaggtcttctttaccttcatcaggattctcaacttcgtattatacatcgtgatcttaaagc |
47744189 |
T |
|
| Q |
823 |
aagtaacattctcttagatgaagaaatgaatcctaagatatctgattttggcatggcaagacta |
886 |
Q |
| |
|
||||||||||||||| || ||| | |||||||||| |||||||||||||| || || |||||| |
|
|
| T |
47744188 |
aagtaacattctcttggacgaaaagttgaatcctaaaatatctgattttggtattgccagacta |
47744125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #22
Raw Score: 64; E-Value: 3e-27
Query Start/End: Original strand, 388 - 587
Target Start/End: Complemental strand, 47758972 - 47758773
Alignment:
| Q |
388 |
tggacaagagattgctgtcaaaaggttgtcaatgagttcgggacaaggagattcggagtttaagaatgaggtacttttggtggctaagcttcaacaccga |
487 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| | ||| ||||| || ||| || ||||||||||| || ||||| || |||||||||||||| ||| |
|
|
| T |
47758972 |
tggacaagtcattgcagtcaaaaggttgtcaacaaattcaggacagggggatgttgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcga |
47758873 |
T |
|
| Q |
488 |
aatttagttagactactcggtttctcactagaaggaagagaaagagtacttgtatatgaatttgttcaaaacaaaagtctcgattatttcatttttggta |
587 |
Q |
| |
|
||||||||| ||||||| ||||| | || ||||||||||||||| | ||||| ||||||| ||||| || |||||||| |||||||| || ||||||| |
|
|
| T |
47758872 |
aatttagttcgactacttggtttttgtctggaaggaagagaaagattgcttgtttatgaatatgttccgaataaaagtcttgattattttatatttggta |
47758773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #23
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 1074 - 1197
Target Start/End: Original strand, 6525528 - 6525651
Alignment:
| Q |
1074 |
tttgtagtggatatatggcacctgaatatgctatgcacggacaattttcagtgaagtcagatgtattcagtttcggtatattggttcttgaaatcgtaag |
1173 |
Q |
| |
|
|||| ||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||||||||| ||||| ||| ||||| ||||||| || |||| |
|
|
| T |
6525528 |
tttgcagtggatatatggcaccggagtatgcaatgcatggacaattttcagtgaagtcagatgtatttagttttggtgtattgattcttgagattataag |
6525627 |
T |
|
| Q |
1174 |
tggttcaaaaaacagtggcattcg |
1197 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
6525628 |
tggccacaaaaacagtggcattcg |
6525651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #24
Raw Score: 53; E-Value: 9e-21
Query Start/End: Original strand, 799 - 879
Target Start/End: Complemental strand, 47701445 - 47701365
Alignment:
| Q |
799 |
cattattcatcgtgatctcaaagcaagtaacattctcttagatgaagaaatgaatcctaagatatctgattttggcatggc |
879 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||||| |||||| ||||||||||||| ||||| |||||||| ||||| |
|
|
| T |
47701445 |
cattatacatcgtgatcttaaagcaagtaacattctcttggatgaaaaaatgaatcctaaaatatcagattttggtatggc |
47701365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #25
Raw Score: 47; E-Value: 4e-17
Query Start/End: Original strand, 431 - 601
Target Start/End: Original strand, 47770627 - 47770797
Alignment:
| Q |
431 |
caaggagattcggagtttaagaatgaggtacttttggtggctaagcttcaacaccgaaatttagttagactactcggtttctcactagaaggaagagaaa |
530 |
Q |
| |
|
||||||||| ||| ||||| ||||| ||| | || || || ||||||||||| ||||||||||||||||| || |||||| ||||||| || |||| |
|
|
| T |
47770627 |
caaggagatgtggaatttaaaaatgaagtattattagtagccaagcttcaacatcgaaatttagttagacttcttggtttcagtttagaagggagtgaaa |
47770726 |
T |
|
| Q |
531 |
gagtacttgtatatgaatttgttcaaaacaaaagtctcgattatttcatttttggtaagttttaatatcta |
601 |
Q |
| |
|
|| | ||| | |||||||||||| ||| |||||||| ||||| ||||| ||||||| |||| |||||||| |
|
|
| T |
47770727 |
gacttcttatttatgaatttgttacaaataaaagtcttgattacttcatatttggtacgtttgaatatcta |
47770797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #26
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 753 - 942
Target Start/End: Original strand, 47774831 - 47775020
Alignment:
| Q |
753 |
gtattgctcgaggcattctttaccttcacgaggattctcgactgcgcattattcatcgtgatctcaaagcaagtaacattctcttagatgaagaaatgaa |
852 |
Q |
| |
|
|||||| |||||| || |||| ||||| ||||||||||| || |||||||| || |||||||||||||| || || ||||||||||| || | ||||| |
|
|
| T |
47774831 |
gtattgttcgaggtcttatttatcttcatgaggattctcgcctccgcattatacaccgtgatctcaaagctagcaatattctcttagacgacgggatgaa |
47774930 |
T |
|
| Q |
853 |
tcctaagatatctgattttggcatggcaagactatttggtgtggaccaaacacaggaaaacacaaaaagaattgtgggaacctagtaagt |
942 |
Q |
| |
|
|||||| ||||| |||||||| |||| ||| | |||| | | || ||||| || | ||| |||| | |||||| |||||||||||||| |
|
|
| T |
47774931 |
tcctaaaatatccgattttggattggcgagattgtttgttattgatcaaactcaaggaaatacaagtaaaattgttggaacctagtaagt |
47775020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #27
Raw Score: 43; E-Value: 0.000000000000009
Query Start/End: Original strand, 1079 - 1177
Target Start/End: Original strand, 47775329 - 47775427
Alignment:
| Q |
1079 |
agtggatatatggcacctgaatatgctatgcacggacaattttcagtgaagtcagatgtattcagtttcggtatattggttcttgaaatcgtaagtggt |
1177 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| ||||||||||| || || || ||||| || |||||||| ||||||||||||| || |||||||| |
|
|
| T |
47775329 |
agtggatatatggcacctgagtatgcaatgcatggacaattttcggtaaaatcggatgtctttagtttcggagtattggttcttgagattttaagtggt |
47775427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #28
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 6516376 - 6516314
Alignment:
| Q |
2 |
tgcatctatttaagaataaggaagccaaagaaaacgtttgaaggtgattaagctgaaacattg |
64 |
Q |
| |
|
||||||||||| | | |||||||||||||||||| |||||||||| |||||| |||||||||| |
|
|
| T |
6516376 |
tgcatctatttgaaagtaaggaagccaaagaaaaggtttgaaggtaattaagttgaaacattg |
6516314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #29
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 719 - 852
Target Start/End: Original strand, 47678778 - 47678911
Alignment:
| Q |
719 |
ttaaattgggaaatgcgctacaaaattattttaggtattgctcgaggcattctttaccttcacgaggattctcgactgcgcattattcatcgtgatctca |
818 |
Q |
| |
|
||||||||||||| |||| |||||| || || |||||| || ||| ||||||| ||||| || ||||||||| | | ||| ||||||||||||||| |
|
|
| T |
47678778 |
ttaaattgggaaagacgcttcaaaatcataaaagatattgcacgtggccttctttatcttcatgaagattctcgattacaaattgttcatcgtgatctca |
47678877 |
T |
|
| Q |
819 |
aagcaagtaacattctcttagatgaagaaatgaa |
852 |
Q |
| |
|
|| ||||||||||| | |||||||||| ||||| |
|
|
| T |
47678878 |
aaacaagtaacattttgctagatgaagagatgaa |
47678911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #30
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 431 - 579
Target Start/End: Original strand, 47774535 - 47774683
Alignment:
| Q |
431 |
caaggagattcggagtttaagaatgaggtacttttggtggctaagcttcaacaccgaaatttagttagactactcggtttctcactagaaggaagagaaa |
530 |
Q |
| |
|
||||||||| ||| ||||| ||||| |||||||| || || || |||||||| |||||||||||||| ||||| |||||| ||||||| ||||||| |
|
|
| T |
47774535 |
caaggagatgtggaatttaaaaatgaagtacttttagtagccaaacttcaacatcgaaatttagttaggctacttggtttcagtttagaagggagagaaa |
47774634 |
T |
|
| Q |
531 |
gagtacttgtatatgaatttgttcaaaacaaaagtctcgattatttcat |
579 |
Q |
| |
|
| | ||| | ||||||| |||| ||| |||||||| ||||| ||||| |
|
|
| T |
47774635 |
aactgcttatttatgaatatgttacaaataaaagtcttgattacttcat |
47774683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #31
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 6505489 - 6505438
Alignment:
| Q |
1 |
ctgcatctatttaagaataaggaagccaaagaaaacgtttgaaggtgattaa |
52 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||| ||||||| ||||| |
|
|
| T |
6505489 |
ctgcatctatttaagactaagaaagccaaagaaaacgtgtgaaggtaattaa |
6505438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #32
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 758 - 881
Target Start/End: Original strand, 47640592 - 47640715
Alignment:
| Q |
758 |
gctcgaggcattctttaccttcacgaggattctcgactgcgcattattcatcgtgatctcaaagcaagtaacattctcttagatgaagaaatgaatccta |
857 |
Q |
| |
|
|||||||| |||||||| || ||||| || || | ||| | ||||||||||||||||||||||| || || |||| ||||||||| | ||||| || | |
|
|
| T |
47640592 |
gctcgagggattctttatctacacgaagactcccaacttagaattattcatcgtgatctcaaagccagcaatgttctattagatgaaaatatgaacccaa |
47640691 |
T |
|
| Q |
858 |
agatatctgattttggcatggcaa |
881 |
Q |
| |
|
|||| || |||||||| ||||||| |
|
|
| T |
47640692 |
agatttcagattttgggatggcaa |
47640715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #33
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 800 - 883
Target Start/End: Original strand, 47698383 - 47698466
Alignment:
| Q |
800 |
attattcatcgtgatctcaaagcaagtaacattctcttagatgaagaaatgaatcctaagatatctgattttggcatggcaaga |
883 |
Q |
| |
|
||||||||||||||||||||| | ||||| | | |||||||| | ||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
47698383 |
attattcatcgtgatctcaaacctagtaatgtattgttagatgataacatgaatcctaaaatatctgatttcggcatggcaaga |
47698466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #34
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 267
Target Start/End: Original strand, 47770407 - 47770466
Alignment:
| Q |
208 |
tgctacaaatgacttctcgcattcaaatcaacttggagaaggcggattcggagttgttta |
267 |
Q |
| |
|
||||||||||||||||||| |||| ||| ||||||| |||||||||| ||||||||||| |
|
|
| T |
47770407 |
tgctacaaatgacttctcgaattctaataaacttgggcaaggcggatttggagttgttta |
47770466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 722 - 881
Target Start/End: Original strand, 47690065 - 47690224
Alignment:
| Q |
722 |
aattgggaaatgcgctacaaaattattttaggtattgctcgaggcattctttaccttcacgaggattctcgactgcgcattattcatcgtgatctcaaag |
821 |
Q |
| |
|
|||||||||| |||||||||||||| || |||||| || || ||||||| |||||||| ||||||||| | | ||| |||| |||||||||||| |
|
|
| T |
47690065 |
aattgggaaagacgctacaaaattataaaagatattgcccgtggtcttctttatcttcacgaagattctcgattacaaattgttcaccgtgatctcaaaa |
47690164 |
T |
|
| Q |
822 |
caagtaacattctcttagatgaagaaatgaatcctaagatatctgattttggcatggcaa |
881 |
Q |
| |
|
||||||| ||| | ||||||| || ||||||| || || | ||||||||||| |||| |
|
|
| T |
47690165 |
caagtaatattttactagatgacgagctgaatccaaaaattacagattttggcattgcaa |
47690224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 801 - 879
Target Start/End: Original strand, 47607328 - 47607406
Alignment:
| Q |
801 |
ttattcatcgtgatctcaaagcaagtaacattctcttagatgaagaaatgaatcctaagatatctgattttggcatggc |
879 |
Q |
| |
|
|||| ||||||||||| ||| | ||||| ||| | ||||||||| | ||||||||||| || || |||||||||||||| |
|
|
| T |
47607328 |
ttatacatcgtgatcttaaacctagtaatattttattagatgaacatatgaatcctaaaatctcagattttggcatggc |
47607406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 161; Significance: 3e-85; HSPs: 7)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 161; E-Value: 3e-85
Query Start/End: Original strand, 189 - 553
Target Start/End: Complemental strand, 5476 - 5112
Alignment:
| Q |
189 |
acttcaacaccatacgtaatgctacaaatgacttctcgcattcaaatcaacttggagaaggcggattcggagttgtttacaaagtaaaataacactatta |
288 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||| |||| || |||||||| |||||||||| || | |||||||||||||||||||| | |||| |
|
|
| T |
5476 |
acttcaacaccatacgtattgctacaaatgatttctcagattctgataaacttggaaaaggcggatttggggctgtttacaaagtaaaataacgccatta |
5377 |
T |
|
| Q |
289 |
aacatcacttcattaattaaaatatgatatactctaatacttgttttgaaaacttatcgctcctaaataatatatatattttcagggtaggctatccaat |
388 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||| || ||||| | ||||||||||| | |||||| ||| ||||||||||||||||| | |||| |
|
|
| T |
5376 |
aacactgctttattaattaaaatatgatatactcttatgattgttataaaaacttatcgttattaaatatattatttattttcagggtaggctcttcaat |
5277 |
T |
|
| Q |
389 |
ggacaagagattgctgtcaaaaggttgtcaatgagttcgggacaaggagattcggagtttaagaatgaggtacttttggtggctaagcttcaacaccgaa |
488 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||| ||| |||||||||||||| |||||||||||||| || |||| || ||||| ||||||||| ||| |
|
|
| T |
5276 |
ggacaagaggttgctgtcaaaaggttatcaatgaattctggacaaggagattcagagtttaagaatgaagtgtttttagttgctaaacttcaacacagaa |
5177 |
T |
|
| Q |
489 |
atttagttagactactcggtttctcactagaaggaagagaaagagtacttgtatatgaatttgtt |
553 |
Q |
| |
|
|| |||||||| |||||||||| | |||||||||||||||||| | ||||||||||| |||||| |
|
|
| T |
5176 |
atctagttagattactcggtttttgcctagaaggaagagaaagacttcttgtatatgagtttgtt |
5112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 160; E-Value: 1e-84
Query Start/End: Original strand, 710 - 945
Target Start/End: Complemental strand, 12588 - 12353
Alignment:
| Q |
710 |
aaagcgcaattaaattgggaaatgcgctacaaaattattttaggtattgctcgaggcattctttaccttcacgaggattctcgactgcgcattattcatc |
809 |
Q |
| |
|
||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
12588 |
aaagcgcaattaaattggggaaggcgctacaaaatcattttaggtattgctcgaggcattctttaccttcacgaggattctcgactacgtgttattcatc |
12489 |
T |
|
| Q |
810 |
gtgatctcaaagcaagtaacattctcttagatgaagaaatgaatcctaagatatctgattttggcatggcaagactatttggtgtggaccaaacacagga |
909 |
Q |
| |
|
|||||||||||||||| || |||||||| |||||||| ||||||||||||||| ||||||||||||||||||| || ||| || | |||||||| ||||| |
|
|
| T |
12488 |
gtgatctcaaagcaagcaatattctcttggatgaagagatgaatcctaagatagctgattttggcatggcaaggctttttagtattgaccaaacccagga |
12389 |
T |
|
| Q |
910 |
aaacacaaaaagaattgtgggaacctagtaagtatt |
945 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
12388 |
aaacacaaatagaattgtgggaacttagtaagtatt |
12353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #3
Raw Score: 158; E-Value: 2e-83
Query Start/End: Original strand, 189 - 600
Target Start/End: Complemental strand, 13096 - 12684
Alignment:
| Q |
189 |
acttcaacaccatacgtaatgctacaaatgacttctcgcattcaaatcaacttggagaaggcggattcggagttgtttacaaagtaaaataacactatta |
288 |
Q |
| |
|
||||||||||||| |||| |||||||||||| ||||| |||| ||| |||||||| |||| ||||| || ||||||||||||||||||| |||||||| |
|
|
| T |
13096 |
acttcaacaccatgcgtattgctacaaatgatttctcagattctaataaacttgga-aaggaggatttgggtttgtttacaaagtaaaatagcactatta |
12998 |
T |
|
| Q |
289 |
aacatcacttcattaattaaa-----atatgatatactctaatacttgttttgaaaacttatcgctcctaaataatatatatattttcagggtaggctat |
383 |
Q |
| |
|
||||| |||| |||||||||| ||||| |||||||| | ||||||| | ||| |||||| | ||||||| ||| ||| |||||||||||| | | |
|
|
| T |
12997 |
aacattactttattaattaaattaaaatatgttatactcttacacttgttattaaagcttatcattactaaatattatttat--tttcagggtaggttct |
12900 |
T |
|
| Q |
384 |
ccaatggacaagagattgctgtcaaaaggttgtcaatgagttcgggacaaggagattcggagtttaagaatgaggtacttttggtggctaagcttcaaca |
483 |
Q |
| |
|
|||| || |||||| |||||||||||||||| ||||||| ||| |||||||||||| |||||||||||||| ||| |||| |||||||| |||||||| |
|
|
| T |
12899 |
ccaacgggcaagaggttgctgtcaaaaggttatcaatgaattccggacaaggagatctagagtttaagaatgaagta-ttttagtggctaaacttcaaca |
12801 |
T |
|
| Q |
484 |
ccgaaatttagttagactactcggtttctcactagaaggaagagaaagagtacttgtatatgaatttgttcaaaacaaaagtctcgattatttcattttt |
583 |
Q |
| |
|
|||||||||||| ||| |||||||||||| |||||||||||||||||| ||||| ||||||| |||||||| || |||||||| ||||| || |||||| |
|
|
| T |
12800 |
ccgaaatttagtaagattactcggtttctgcctagaaggaagagaaagactacttatatatgagtttgttcataataaaagtcttgattactttattttt |
12701 |
T |
|
| Q |
584 |
ggtaagttttaatatct |
600 |
Q |
| |
|
|||| |||||| ||||| |
|
|
| T |
12700 |
ggtaggttttattatct |
12684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #4
Raw Score: 135; E-Value: 1e-69
Query Start/End: Original strand, 683 - 941
Target Start/End: Complemental strand, 4994 - 4737
Alignment:
| Q |
683 |
ggtatgttatatgcagatcgagttaagaaagcgcaattaaattgggaaatgcgctacaaaattattttaggtattgctcgaggcattctttaccttcacg |
782 |
Q |
| |
|
||||||| | ||||||||| || |||| ||||||||||||||||| || ||||||| ||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4994 |
ggtatgtcaaatgcagatcaagcaaagagagcgcaattaaattggggaaagcgctacctaatcattttaggtattgctcgaggcattctataccttcacc |
4895 |
T |
|
| Q |
783 |
aggattctcgactgcgcattattcatcgtgatctcaaagcaagtaacattctcttagatgaagaaatgaatcctaagatatctgattttggcatggcaag |
882 |
Q |
| |
|
||||||||||| | || |||||||| | ||||||||||||||||| |||||||| |||||| | ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4894 |
aggattctcgatttcgtgttattcatagagatctcaaagcaagtaatattctcttggatgaacatatgaatcctaagatagctgattttggcatggcaag |
4795 |
T |
|
| Q |
883 |
actatttggtgtggaccaaacacaggaaaacacaaaaagaattgtgggaacctagtaag |
941 |
Q |
| |
|
||| |||||||| |||||||| |||| ||||||||| |||||||||||||| ||||||| |
|
|
| T |
4794 |
actttttggtgttgaccaaacccagg-aaacacaaatagaattgtgggaacttagtaag |
4737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #5
Raw Score: 125; E-Value: 1e-63
Query Start/End: Original strand, 1069 - 1353
Target Start/End: Complemental strand, 12254 - 11967
Alignment:
| Q |
1069 |
attgttttgtagtggatatatggcacctgaatatgctatgcacggacaattttcagtgaagtcagatgtattcagtttcggtatattggttcttgaaatc |
1168 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||| ||||| |||||||| || || ||||| || ||||| |||||||||||| | ||||| |
|
|
| T |
12254 |
attgttttgtagtggatatatggcacctgagtatgtaatgcaaggacagttttcagtaaaatccgatgtctttagttttggtatattggttttagaaatt |
12155 |
T |
|
| Q |
1169 |
gtaagtggttcaaaaaacagtggcattcgcgatgaggagaatactgagtatctatcgagctttgtaagtcatacttttcatgtcatcatatatttcatg- |
1267 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||| ||||||||| || ||||| || ||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
12154 |
gtaagtggtgcaaaaaacagtggcattcgtgatggggagaatacagaatatctctcaagctttgtaagtcatacttttcatgtcgtcatatctttcatgt |
12055 |
T |
|
| Q |
1268 |
-tagaagtg-tattatatctaacctagtattttatttgcgtttggacaaatttgtgcaggcatggaggaattggaaggagggaactgc |
1353 |
Q |
| |
|
|||||||| |||||||||||| || | ||||||| ||||| |||||||||||||||||||| ||||||||||| || ||||| |
|
|
| T |
12054 |
ttagaagtgaaattatatctaacaaagagtagtatttgcatttgggtaaatttgtgcaggcatggagaaattggaaggaagggactgc |
11967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #6
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 1069 - 1246
Target Start/End: Complemental strand, 4629 - 4452
Alignment:
| Q |
1069 |
attgttttgtagtggatatatggcacctgaatatgctatgcacggacaattttcagtgaagtcagatgtattcagtttcggtatattggttcttgaaatc |
1168 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||| ||||||||||||||||| || || |||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
4629 |
attgttttgtagcggatatatggcacctgagtatgtaatgcacggacaattttcggtaaaatcagatgtcttcagttttggtatattggttcttgaaatt |
4530 |
T |
|
| Q |
1169 |
gtaagtggttcaaaaaacagtggcattcgcgatgaggagaatactgagtatctatcgagctttgtaagtcatactttt |
1246 |
Q |
| |
|
||||||||| | ||||| ||| ||||||| |||| ||||||||| || ||||| || |||||||||||||||| |||| |
|
|
| T |
4529 |
gtaagtggtgctaaaaatagtagcattcgtgatggggagaatacagaatatctctcaagctttgtaagtcataatttt |
4452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 7167 - 7116
Alignment:
| Q |
1 |
ctgcatctatttaagaataaggaagccaaagaaaacgtttgaaggtgattaa |
52 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||| ||||||| ||||| |
|
|
| T |
7167 |
ctgcatctatttaagactaagaaagccaaagaaaacgtgtgaaggtaattaa |
7116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 4e-54; HSPs: 15)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 4e-54
Query Start/End: Original strand, 707 - 943
Target Start/End: Complemental strand, 28829182 - 28828946
Alignment:
| Q |
707 |
aagaaagcgcaattaaattgggaaatgcgctacaaaattattttaggtattgctcgaggcattctttaccttcacgaggattctcgactgcgcattattc |
806 |
Q |
| |
|
|||||||| |||||| ||||||||| |||||||||||| ||| ||||||| ||||||| ||||||| ||||| || ||||||||||| |||||||| | |
|
|
| T |
28829182 |
aagaaagcacaattagattgggaaaagcgctacaaaatcattcaaggtattactcgaggtgttctttatcttcatgaagattctcgactacgcattatac |
28829083 |
T |
|
| Q |
807 |
atcgtgatctcaaagcaagtaacattctcttagatgaagaaatgaatcctaagatatctgattttggcatggcaagactatttggtgtggaccaaacaca |
906 |
Q |
| |
|
| |||||||| |||||||| |||||||||||||||| ||| |||||| |||||||| | ||||||||||||||||||||| || |||||| |||||||| |
|
|
| T |
28829082 |
accgtgatcttaaagcaagcaacattctcttagatggagacatgaatgctaagatagcagattttggcatggcaagactaattcttgtggatcaaacaca |
28828983 |
T |
|
| Q |
907 |
ggaaaacacaaaaagaattgtgggaacctagtaagta |
943 |
Q |
| |
|
| ||| |||| |||||||| ||||||||||||||| |
|
|
| T |
28828982 |
agcaaatacaagtagaattgttggaacctagtaagta |
28828946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 707 - 886
Target Start/End: Complemental strand, 28860201 - 28860022
Alignment:
| Q |
707 |
aagaaagcgcaattaaattgggaaatgcgctacaaaattattttaggtattgctcgaggcattctttaccttcacgaggattctcgactgcgcattattc |
806 |
Q |
| |
|
|||||||| ||||||| |||||||| |||||||||||| ||| |||||||||||||||| ||||||||||||| ||||||||||||||||| ||||| | |
|
|
| T |
28860201 |
aagaaagcacaattaatttgggaaaagcgctacaaaatcattcaaggtattgctcgaggcgttctttaccttcatgaggattctcgactgcgtattatac |
28860102 |
T |
|
| Q |
807 |
atcgtgatctcaaagcaagtaacattctcttagatgaagaaatgaatcctaagatatctgattttggcatggcaagacta |
886 |
Q |
| |
|
| || |||||||||||||| ||||||||| |||| ||||| |||||| ||||||| || ||||||||||||||||||||| |
|
|
| T |
28860101 |
accgcgatctcaaagcaagcaacattctcctagacgaagacatgaatgctaagatttcagattttggcatggcaagacta |
28860022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 707 - 945
Target Start/End: Complemental strand, 28854843 - 28854605
Alignment:
| Q |
707 |
aagaaagcgcaattaaattgggaaatgcgctacaaaattattttaggtattgctcgaggcattctttaccttcacgaggattctcgactgcgcattattc |
806 |
Q |
| |
|
|||||||| |||||| ||||||||| ||||||||||| ||| ||||||||||||||| |||| || ||||| |||||||||||||| |||||||| | |
|
|
| T |
28854843 |
aagaaagcacaattagattgggaaaaacgctacaaaatcattaaaggtattgctcgaggtgttctctatcttcatgaggattctcgactacgcattatac |
28854744 |
T |
|
| Q |
807 |
atcgtgatctcaaagcaagtaacattctcttagatgaagaaatgaatcctaagatatctgattttggcatggcaagactatttggtgtggaccaaacaca |
906 |
Q |
| |
|
| ||||||||||||||| | || ||||||||||||||| | |||||| |||||||||| ||||| ||||||||||||||| || |||||| |||||||| |
|
|
| T |
28854743 |
accgtgatctcaaagcaggcaatattctcttagatgaaaacatgaatgctaagatatcagatttcggcatggcaagactaattcttgtggatcaaacaca |
28854644 |
T |
|
| Q |
907 |
ggaaaacacaaaaagaattgtgggaacctagtaagtatt |
945 |
Q |
| |
|
||||| |||| || |||| ||||| ||||||||||| |
|
|
| T |
28854643 |
agaaaatacaagtagtgttgttggaacttagtaagtatt |
28854605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 7e-37
Query Start/End: Original strand, 707 - 942
Target Start/End: Complemental strand, 28874771 - 28874536
Alignment:
| Q |
707 |
aagaaagcgcaattaaattgggaaatgcgctacaaaattattttaggtattgctcgaggcattctttaccttcacgaggattctcgactgcgcattattc |
806 |
Q |
| |
|
|||||||| |||||| ||||||| | |||||||||||| ||| ||| |||||||||||| ||||||| ||||| | |||||| ||||||| ||||| | |
|
|
| T |
28874771 |
aagaaagcacaattagattgggagaagcgctacaaaatcattcaaggcattgctcgaggcgttctttatcttcatggggattcaagactgcgtattatac |
28874672 |
T |
|
| Q |
807 |
atcgtgatctcaaagcaagtaacattctcttagatgaagaaatgaatcctaagatatctgattttggcatggcaagactatttggtgtggaccaaacaca |
906 |
Q |
| |
|
| || |||||||||||||| |||||||||||||| ||||| ||||| ||||||| || |||||||||||||||||||| || |||||| ||||| || |
|
|
| T |
28874671 |
accgcgatctcaaagcaagcaacattctcttagacgaagacgtgaatgctaagatctcagattttggcatggcaagacttattcttgtggatcaaaccca |
28874572 |
T |
|
| Q |
907 |
ggaaaacacaaaaagaattgtgggaacctagtaagt |
942 |
Q |
| |
|
| ||| |||| ||| |||| | |||||||||||| |
|
|
| T |
28874571 |
agcaaatacaagtagagttgttgaaacctagtaagt |
28874536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 79; E-Value: 3e-36
Query Start/End: Original strand, 716 - 890
Target Start/End: Complemental strand, 27368825 - 27368651
Alignment:
| Q |
716 |
caattaaattgggaaatgcgctacaaaattattttaggtattgctcgaggcattctttaccttcacgaggattctcgactgcgcattattcatcgtgatc |
815 |
Q |
| |
|
||||| |||||| ||| ||||||||| || || ||||||||||||||| ||||||| ||||||||||||||||| |||||||||| || ||||||| |
|
|
| T |
27368825 |
caattgaattggcaaacgcgctacaatatcataaaaggtattgctcgaggtcttctttatcttcacgaggattctcgcttgcgcattatacaccgtgatc |
27368726 |
T |
|
| Q |
816 |
tcaaagcaagtaacattctcttagatgaagaaatgaatcctaagatatctgattttggcatggcaagactatttg |
890 |
Q |
| |
|
|||||||||| || ||||| ||||| ||||| ||||||||||||||||| |||||||| ||||||||| ||||| |
|
|
| T |
27368725 |
tcaaagcaagcaatattcttttagacgaagagatgaatcctaagatatccgattttggattggcaagacgatttg |
27368651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 367 - 587
Target Start/End: Complemental strand, 28860541 - 28860321
Alignment:
| Q |
367 |
ttttcagggtaggctatccaatggacaagagattgctgtcaaaaggttgtcaatgagttcgggacaaggagattcggagtttaagaatgaggtacttttg |
466 |
Q |
| |
|
||||||||||||||| || |||||||||| ||| ||||| ||||||||||| || | ||| || ||||||||| |||||||||||||| || ||||| |
|
|
| T |
28860541 |
ttttcagggtaggctctctaatggacaagcgatcgctgttaaaaggttgtccattaattctggccaaggagatagagagtttaagaatgaagtgctttta |
28860442 |
T |
|
| Q |
467 |
gtggctaagcttcaacaccgaaatttagttagactactcggtttctcactagaaggaagagaaagagtacttgtatatgaatttgttcaaaacaaaagtc |
566 |
Q |
| |
|
|||| || ||||||||||| ||||||||||||||||| ||||| | | ||||| ||||||||| ||||||| ||||||||| ||| || ||||||| |
|
|
| T |
28860441 |
atggccaaacttcaacaccggaatttagttagactacttggttttactattgaagggagagaaagactacttgtctatgaatttattcccaataaaagtc |
28860342 |
T |
|
| Q |
567 |
tcgattatttcatttttggta |
587 |
Q |
| |
|
| || || ||||| ||||||| |
|
|
| T |
28860341 |
ttgactacttcatatttggta |
28860321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 69; E-Value: 3e-30
Query Start/End: Original strand, 367 - 587
Target Start/End: Complemental strand, 28829505 - 28829285
Alignment:
| Q |
367 |
ttttcagggtaggctatccaatggacaagagattgctgtcaaaaggttgtcaatgagttcgggacaaggagattcggagtttaagaatgaggtacttttg |
466 |
Q |
| |
|
|||||||||||| || || |||||||||| |||||| || |||||||| || || | ||| || ||||||||| || |||||||| || |||| |||| |
|
|
| T |
28829505 |
ttttcagggtagactctctaatggacaagtgattgcggtgaaaaggttatccataaattctggtcaaggagatctagaatttaagaacgaagtacgtttg |
28829406 |
T |
|
| Q |
467 |
gtggctaagcttcaacaccgaaatttagttagactactcggtttctcactagaaggaagagaaagagtacttgtatatgaatttgttcaaaacaaaagtc |
566 |
Q |
| |
|
||||| || |||||||||||||||||||||||||| || ||||| | | ||||| ||||||||| ||||||| ||||||||||||| || ||||||| |
|
|
| T |
28829405 |
gtggccaaacttcaacaccgaaatttagttagactccttggttttactgttgaagggagagaaagattacttgtctatgaatttgttcctaataaaagtc |
28829306 |
T |
|
| Q |
567 |
tcgattatttcatttttggta |
587 |
Q |
| |
|
| || || ||||| ||||||| |
|
|
| T |
28829305 |
ttgactacttcatatttggta |
28829285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 68; E-Value: 1e-29
Query Start/End: Original strand, 397 - 592
Target Start/End: Complemental strand, 27369327 - 27369132
Alignment:
| Q |
397 |
gattgctgtcaaaaggttgtcaatgagttcgggacaaggagattcggagtttaagaatgaggtacttttggtggctaagcttcaacaccgaaatttagtt |
496 |
Q |
| |
|
||||||||| ||||||||||||| | ||| | ||||||||| |||||||| ||||| |||||||| || || || |||||||| |||||| ||||| |
|
|
| T |
27369327 |
gattgctgtgaaaaggttgtcaacaaattctgaccaaggagatgttgagtttaaaaatgaagtacttttagtagccaaacttcaacatcgaaatctagtt |
27369228 |
T |
|
| Q |
497 |
agactactcggtttctcactagaaggaagagaaagagtacttgtatatgaatttgttcaaaacaaaagtctcgattatttcatttttggtaagttt |
592 |
Q |
| |
|
|| ||||| ||||||| |||||||| ||||||||| ||||| | |||||||||||| ||| |||||||| ||||| ||||| |||||||||||| |
|
|
| T |
27369227 |
aggctacttggtttctgtctagaagggagagaaagactacttatttatgaatttgtttcaaataaaagtcttgattacttcatatttggtaagttt |
27369132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 61; E-Value: 2e-25
Query Start/End: Original strand, 367 - 587
Target Start/End: Complemental strand, 28855182 - 28854962
Alignment:
| Q |
367 |
ttttcagggtaggctatccaatggacaagagattgctgtcaaaaggttgtcaatgagttcgggacaaggagattcggagtttaagaatgaggtacttttg |
466 |
Q |
| |
|
|||| |||||| ||| || |||||||||| |||||| |||||||||||||| |||| ||| || ||||||||| ||| ||||||||||| || | ||| |
|
|
| T |
28855182 |
tttttagggtacgctctctaatggacaagtgattgccgtcaaaaggttgtccatgaattctggccaaggagatctggaatttaagaatgaattaatcttg |
28855083 |
T |
|
| Q |
467 |
gtggctaagcttcaacaccgaaatttagttagactactcggtttctcactagaaggaagagaaagagtacttgtatatgaatttgttcaaaacaaaagtc |
566 |
Q |
| |
|
||||||| |||||||| | |||||||||||| |||| ||||| | | ||||| ||||||||| |||| || ||||||||||||| || ||||||| |
|
|
| T |
28855082 |
atggctaaacttcaacatcaaaatttagttaggttacttggttttactatcgaagggagagaaagactactagtctatgaatttgttcccaataaaagtc |
28854983 |
T |
|
| Q |
567 |
tcgattatttcatttttggta |
587 |
Q |
| |
|
| || || ||||| ||||||| |
|
|
| T |
28854982 |
ttgactacttcatatttggta |
28854962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 61; E-Value: 2e-25
Query Start/End: Original strand, 367 - 567
Target Start/End: Complemental strand, 28875111 - 28874911
Alignment:
| Q |
367 |
ttttcagggtaggctatccaatggacaagagattgctgtcaaaaggttgtcaatgagttcgggacaaggagattcggagtttaagaatgaggtacttttg |
466 |
Q |
| |
|
||||||||||||||| || ||||||||| ||| ||||| ||||||||||| |||| ||| || ||||||||| || ||||||||||| || ||||| |
|
|
| T |
28875111 |
ttttcagggtaggctctctaatggacaaacgatcgctgttaaaaggttgtccatgaattctggccaaggagatatagaatttaagaatgaagtgctttta |
28875012 |
T |
|
| Q |
467 |
gtggctaagcttcaacaccgaaatttagttagactactcggtttctcactagaaggaagagaaagagtacttgtatatgaatttgttcaaaacaaaagtc |
566 |
Q |
| |
|
|||| || ||||||||||| ||||| ||||||||||| ||||| | | ||||| ||||||||| ||||||| ||||||||| ||| || ||||||| |
|
|
| T |
28875011 |
atggccaaacttcaacaccggaatttggttagactacttggttttactattgaagggagagaaagactacttgtctatgaatttattcccaataaaagtc |
28874912 |
T |
|
| Q |
567 |
t |
567 |
Q |
| |
|
| |
|
|
| T |
28874911 |
t |
28874911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000009
Query Start/End: Original strand, 1076 - 1238
Target Start/End: Complemental strand, 28859863 - 28859701
Alignment:
| Q |
1076 |
tgtagtggatatatggcacctgaatatgctatgcacggacaattttcagtgaagtcagatgtattcagtttcggtatattggttcttgaaatcgtaagtg |
1175 |
Q |
| |
|
||||| ||||||||||||||||| |||| ||||| ||| ||||||||||||| |||||||| || ||||| ||| | |||||||||| || |||||| |
|
|
| T |
28859863 |
tgtagcggatatatggcacctgagtatgtaatgcatggagaattttcagtgaaatcagatgtctttagttttggtgttctggttcttgagattataagtg |
28859764 |
T |
|
| Q |
1176 |
gttcaaaaaacagtggcattcgcgatgaggagaatactgagtatctatcgagctttgtaagtc |
1238 |
Q |
| |
|
| ||| || ||| ||||||| | | ||| ||||| ||| |||||| |||||||||||||| |
|
|
| T |
28859763 |
gccaaaagaatagttgcattcgtcacggggaaaatacggaggatctattgagctttgtaagtc |
28859701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1076 - 1237
Target Start/End: Complemental strand, 28854476 - 28854315
Alignment:
| Q |
1076 |
tgtagtggatatatggcacctgaatatgctatgcacggacaattttcagtgaagtcagatgtattcagtttcggtatattggttcttgaaatcgtaagtg |
1175 |
Q |
| |
|
||||| || |||||||||||||| |||| ||||| ||| |||||||||| || |||||||| |||||||| ||| || | |||||||| || |||||| |
|
|
| T |
28854476 |
tgtagcgggtatatggcacctgagtatgtaatgcatggagaattttcagtaaaatcagatgtcttcagttttggtgtactagttcttgagattataagtg |
28854377 |
T |
|
| Q |
1176 |
gttcaaaaaacagtggcattcgcgatgaggagaatactgagtatctatcgagctttgtaagt |
1237 |
Q |
| |
|
| ||| || ||||||| || ||| ||| | ||| ||| |||||| ||||||||||||| |
|
|
| T |
28854376 |
gcctaaagaatagtggcactcatcatggggaaattacggaggatctattgagctttgtaagt |
28854315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 28855525 - 28855466
Alignment:
| Q |
208 |
tgctacaaatgacttctcgcattcaaatcaacttggagaaggcggattcggagttgttta |
267 |
Q |
| |
|
|||||||||||||||||| |||| ||| ||||||| ||||||||||| |||| |||||| |
|
|
| T |
28855525 |
tgctacaaatgacttctctgattctaataaacttggcgaaggcggatttggagctgttta |
28855466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1079 - 1137
Target Start/End: Complemental strand, 27368414 - 27368356
Alignment:
| Q |
1079 |
agtggatatatggcacctgaatatgctatgcacggacaattttcagtgaagtcagatgt |
1137 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| ||| ||||||| || || |||||||| |
|
|
| T |
27368414 |
agtggatatatggcacctgagtatgcgatgcatggagaattttcggtaaaatcagatgt |
27368356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1076 - 1137
Target Start/End: Complemental strand, 28828775 - 28828714
Alignment:
| Q |
1076 |
tgtagtggatatatggcacctgaatatgctatgcacggacaattttcagtgaagtcagatgt |
1137 |
Q |
| |
|
||||||||||| ||||||||||| |||| ||||| ||| ||||||| ||||| |||||||| |
|
|
| T |
28828775 |
tgtagtggatacatggcacctgagtatgtaatgcatggagaattttcggtgaaatcagatgt |
28828714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 3e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 3e-27
Query Start/End: Original strand, 723 - 886
Target Start/End: Original strand, 11224740 - 11224903
Alignment:
| Q |
723 |
attgggaaatgcgctacaaaattattttaggtattgctcgaggcattctttaccttcacgaggattctcgactgcgcattattcatcgtgatctcaaagc |
822 |
Q |
| |
|
||||||||| |||||||||||| ||| ||| ||||| |||| ||||||||||||| ||||||||| ||| || ||||| ||||||||||| ||||| |
|
|
| T |
11224740 |
attgggaaaggcgctacaaaatcattggaggaattgcaagaggtcttctttaccttcatcaggattctcaacttcgtattatacatcgtgatcttaaagc |
11224839 |
T |
|
| Q |
823 |
aagtaacattctcttagatgaagaaatgaatcctaagatatctgattttggcatggcaagacta |
886 |
Q |
| |
|
||||||||||||||| || ||| | |||||||||| |||||||||||||| || || |||||| |
|
|
| T |
11224840 |
aagtaacattctcttggacgaaaagttgaatcctaaaatatctgattttggtattgccagacta |
11224903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 803 - 879
Target Start/End: Complemental strand, 2698577 - 2698501
Alignment:
| Q |
803 |
attcatcgtgatctcaaagcaagtaacattctcttagatgaagaaatgaatcctaagatatctgattttggcatggc |
879 |
Q |
| |
|
|||||||| ||||| ||||||||||||||| | ||||||||| | |||||||| || |||||||| |||||| |||| |
|
|
| T |
2698577 |
attcatcgagatctaaaagcaagtaacattttgttagatgaaaacatgaatccaaaaatatctgactttggcttggc |
2698501 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 803 - 879
Target Start/End: Complemental strand, 14519996 - 14519920
Alignment:
| Q |
803 |
attcatcgtgatctcaaagcaagtaacattctcttagatgaagaaatgaatcctaagatatctgattttggcatggc |
879 |
Q |
| |
|
|||||||| ||||| ||| ||||||||||| | ||||||||| | |||||||| || |||||||| |||||| |||| |
|
|
| T |
14519996 |
attcatcgagatctaaaaccaagtaacattttgttagatgaaaacatgaatccaaaaatatctgactttggcttggc |
14519920 |
T |
|
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Target: chr3 (Bit Score: 33; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 818 - 882
Target Start/End: Original strand, 3094891 - 3094955
Alignment:
| Q |
818 |
aaagcaagtaacattctcttagatgaagaaatgaatcctaagatatctgattttggcatggcaag |
882 |
Q |
| |
|
||||||||||| ||||||||||| |||| |||||||| || |||||||||||||| ||||||| |
|
|
| T |
3094891 |
aaagcaagtaatgttctcttagatcaagagatgaatccaaaaatatctgattttggattggcaag |
3094955 |
T |
|
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Target: scaffold0090 (Bit Score: 30; Significance: 0.0000005; HSPs: 1)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 387 - 436
Target Start/End: Complemental strand, 8764 - 8715
Alignment:
| Q |
387 |
atggacaagagattgctgtcaaaaggttgtcaatgagttcgggacaagga |
436 |
Q |
| |
|
|||||||||| ||||||||||||||| | |||| |||||| ||||||||| |
|
|
| T |
8764 |
atggacaagaaattgctgtcaaaaggctttcaaggagttctggacaagga |
8715 |
T |
|
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