View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2926_high_10 (Length: 491)
Name: NF2926_high_10
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2926_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 11 - 473
Target Start/End: Complemental strand, 12834044 - 12833580
Alignment:
| Q |
11 |
cacagacgatggaaaacatgggattacaagcttcagaagttaactcaatatggaccgtaacgtataatacaaaggttttttatgtct--ataactataac |
108 |
Q |
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| T |
12834044 |
cacagacgatggaaaacatggtattacaagcttcagaagttaactcaatatggaccgtaacgtataatacaaaggatttttatgtctctataactataac |
12833945 |
T |
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| Q |
109 |
atcgttgtaatttaagtggcagctgtatctaacagcagttatccgcattattaaagatcaaaacttaattgtgacttaaaaccttgtcattgactgacta |
208 |
Q |
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| T |
12833944 |
atcgttgtaatttaagtggcagctgtatctaacagcagttatctgcattattaaagatcacaacttaattgtgatttaaaaccttgtcattgactgacta |
12833845 |
T |
|
| Q |
209 |
gattatcatggattaatagatgaactatccaagtaccattttgttatgaaattaaaaacattcctgatgactgattgcagcagaattgaaattgagcagc |
308 |
Q |
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| T |
12833844 |
gattatcatggattaatagatgaactatccaagtaccattttgttatgaaattaaaaacattcctgatgactgattgcagcagagttgaaattgagcagc |
12833745 |
T |
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| Q |
309 |
aggaataaggaaatcagaaggaacacacggattatcaaggttatgagcaattgaactcttacgtcctcgctgatgtagctttctattctagatcaatcaa |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
12833744 |
aggaataaggaaatcagaaggaacacacggattatcaaggttatgagcaattgaactcttatgtcctagctgatgtagctttctattctagatcaatcaa |
12833645 |
T |
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| Q |
409 |
aggcagaggtacaagattttctaaaccttagagcatatgctctctctactcacttgctagatttg |
473 |
Q |
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| T |
12833644 |
aggcagaggtacaagattttctaaaccttagagcatatgctctctctactcacttgatagatttg |
12833580 |
T |
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