View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2926_high_13 (Length: 451)
Name: NF2926_high_13
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2926_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 20 - 441
Target Start/End: Complemental strand, 5688015 - 5687602
Alignment:
| Q |
20 |
cttccttctggttccactgctccattttcatttcatcactcttcactacaaaatcatcctcatcgttcaccactgttcttccctcttacaggttgtgtta |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
5688015 |
cttccttctggttccactgctccattttcatttcatcactcttcactataaaatcaacctcatcgtccaccactgttcttccctcttataggttgtgtta |
5687916 |
T |
|
| Q |
120 |
tcaccatttccagaagnnnnnnnnngttacccttttaatgnnnnnnncttcttctcaatctttgtcccttttctctttgacactcttatagatagtgttc |
219 |
Q |
| |
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|||||||| |||||| ||||||||||||||| || ||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
5687915 |
tcaccattcccagaa---aaaaaaagttacccttttaatgttttttt-ttattctcaatctttgacccttttctctttgacacttttatagatagtgttc |
5687820 |
T |
|
| Q |
220 |
agattcaaattcattcatataaacgtgagattcagatttagattccaaatgaagaatcgaagcgagattatcaagaatcagtgggcttacgacatggatg |
319 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5687819 |
agattcggattcattcatataaacgtgagattcagatttagattccaaataaagaatcgaagcgagattatcaagaatcagtgggcttacgacatgga-- |
5687722 |
T |
|
| Q |
320 |
gatggacggtggttggtttgggaggcggtggaggagtgaacagtgatgatttagttggtggtggttggttcatggtgaaaatgagggaaggagagttagt |
419 |
Q |
| |
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||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5687721 |
--tggacggtggttggtgtgggaggcagtggaggagtgaacggtgatgatttagttggtggtggttgtttcatggtgaaaatgagggaaggagagttagt |
5687624 |
T |
|
| Q |
420 |
gttgctatggttgggttctgtg |
441 |
Q |
| |
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|||||| ||| ||||||||||| |
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| T |
5687623 |
gttgctctggctgggttctgtg |
5687602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 217 - 425
Target Start/End: Original strand, 22622546 - 22622752
Alignment:
| Q |
217 |
ttcagattcaaattcattcatataaacg---tgagattcagatttagattccaaatgaagaatcgaagcgagattatcaagaatcagtgggcttacgaca |
313 |
Q |
| |
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|||| ||||| |||||||||||||||| | ||||||||||||||| || | ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
22622546 |
ttcaaattcagattcattcatataaacactatcagattcagatttagactcttacagaagaatcgaagcgagattatcaagaatcgatgggcttacgaca |
22622645 |
T |
|
| Q |
314 |
tggatggatggacggtggttggtttgggaggcggtggaggagtgaacagtgatgatttagttggtggtggttggttcatggtgaaaatgagggaaggaga |
413 |
Q |
| |
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||||||||| |||||| ||||| ||||||||||||| ||| || ||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
22622646 |
tggatggatc-acggtgtttggtgtgggaggcggtgg----gtggacggtgatgatttagttggtggtggttgtttcatggtgaaaatgagagaaggaga |
22622740 |
T |
|
| Q |
414 |
gttagtgttgct |
425 |
Q |
| |
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| ||||||||| |
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| T |
22622741 |
gcgagtgttgct |
22622752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 20 - 441
Target Start/End: Original strand, 46674213 - 46674619
Alignment:
| Q |
20 |
cttccttctggttccactgctccattttcatttcatcactcttcactacaaaatcatcctcatcgttcaccactgttcttccctcttacaggttgtgtta |
119 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| || ||||| ||||||||||| |
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| T |
46674213 |
cttccttctggttccactgttccattttcatttcatcactcttcactacaaaatcaacctcatcgtccaccactgttctaccttcttataggttgtgtta |
46674312 |
T |
|
| Q |
120 |
tcaccatttccagaagnnnnnnnnngttacccttttaatgnnnnnnncttcttctcaatctttgtcccttttctctttgacactcttatagatagtgttc |
219 |
Q |
| |
|
|||||||| | |||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
46674313 |
tcaccattcctagaa-----aaaaagttacccttttaatgttttttttttcttctcaatctttgacccttttctctttgacactcttatagatagtgttc |
46674407 |
T |
|
| Q |
220 |
agattcaaattcattcatataaacgtgagattcagatttagattccaaatgaagaatcgaagcgagattatcaagaatcagtgggcttacgacatggatg |
319 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46674408 |
agattca------ttcatataaacgtgagattcagatttagattccaaataaagaatcgaagcgagattatcaagaatcagtgggcttacgacatgg--- |
46674498 |
T |
|
| Q |
320 |
gatggacggtggttggtttgggaggcggtggaggagtgaacagtgatgatttagttggtggtggttggttcatggtgaaaatgagggaaggagagttagt |
419 |
Q |
| |
|
|||||||||||||||| |||||||||||| | |||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
46674499 |
-atggacggtggttggtgtgggaggcggtgaaagagtgaacggtgatgatttagttggtggtggttgtttcatgatgaaaatgagggaaggagagttagt |
46674597 |
T |
|
| Q |
420 |
gttgctatggttgggttctgtg |
441 |
Q |
| |
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|||||||||| ||| ||||||| |
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| T |
46674598 |
gttgctatggatggtttctgtg |
46674619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 441
Target Start/End: Original strand, 31624636 - 31625070
Alignment:
| Q |
20 |
cttccttctggttccactgctccattttcatttcatcactcttcactacaaaatcatcctcatcgttcaccactgttcttccctcttacaggttgtgtta |
119 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||| ||||||||| |
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| T |
31624636 |
cttccttctcgttccactgctccattttcatttcatcactcttcactacaaaatcaacctcattgtccaccactgttcttccctcttacaagttgtgtta |
31624735 |
T |
|
| Q |
120 |
tcaccatttccagaagnnnnnnnnngttacccttttaatgnnnnnnncttcttctcaatctttgtcccttttctctttgacactcttatagatagtgttc |
219 |
Q |
| |
|
|||||||| |||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31624736 |
tcaccattcccagaa----aaaaaagttacccttttaatgttatttttttcttctcaatctttgacccttttctctttgacactcttatagatagtgttc |
31624831 |
T |
|
| Q |
220 |
agattcaaattcattcatataaa---------------------cgtgagattcagatttagattccaaatgaagaatcgaagcgagattatcaagaatc |
298 |
Q |
| |
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||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
31624832 |
agattcagattcattcatataaatgtgagattcattcatataaacgtgagattcagaattagattccaaatgaagaatcaaagtgagattatcaagaatc |
31624931 |
T |
|
| Q |
299 |
agtgggcttacgacatggatggatggacggtggttggtttgggaggcggtggaggagtgaacagtgatgatttagttggtggtggttggttcatggtgaa |
398 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||| |
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|
| T |
31624932 |
agtgggcttacgacatgg----atggacggtggttggtgtgggaggcggtggaggagtgaacggtgattatttagttggtggtggttgtttcatggtgaa |
31625027 |
T |
|
| Q |
399 |
aatgagggaaggagagttagtgttgctatggttgggttctgtg |
441 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
31625028 |
aatgagggaaggagagttagtgttgctttggctgggttctgtg |
31625070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 171 - 404
Target Start/End: Original strand, 40250650 - 40250885
Alignment:
| Q |
171 |
ttctcaatctttgtcccttttctctttgacactcttatagatagt---gttcagattcaaattcattcatataaacgtgagattcagatttagattccaa |
267 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| || | ||||||||||| ||||||||| |||||| ||||||||||||||||| ||| | |
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|
| T |
40250650 |
ttctcaatctttgacccttttctctttgacactcttatatattatcatgttcagattcagattcattcacataaacatgagattcagatttagactccga |
40250749 |
T |
|
| Q |
268 |
atgaagaatcgaagcgagattatcaagaatcagtgggcttacgacatggatggatggacggtggttggtttgggaggcggtggaggagtgaacagtgatg |
367 |
Q |
| |
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|||||||||||||| |||||||||||||||| |||||||||||||||||||||| || |||||||| ||||||| |||||||||||| || |||| | |
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| T |
40250750 |
atgaagaatcgaagtgagattatcaagaatctatgggcttacgacatggatggat-cacaatggttggtgtgggagggggtggaggagtggacggtgacg |
40250848 |
T |
|
| Q |
368 |
atttagttggtggtggttggttcatggtgaaaatgag |
404 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||| |
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|
| T |
40250849 |
atttagttggtggtggttgtttcatggtgaaaatgag |
40250885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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