View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2926_high_16 (Length: 428)

Name: NF2926_high_16
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2926_high_16
NF2926_high_16
[»] chr1 (2 HSPs)
chr1 (13-410)||(3675423-3675817)
chr1 (214-255)||(3078928-3078969)
[»] chr3 (1 HSPs)
chr3 (15-76)||(48553314-48553375)
[»] chr4 (2 HSPs)
chr4 (220-261)||(1573924-1573965)
chr4 (13-61)||(51938995-51939043)
[»] chr8 (2 HSPs)
chr8 (221-261)||(27160963-27161003)
chr8 (222-262)||(34444304-34444344)
[»] chr6 (1 HSPs)
chr6 (219-259)||(5933231-5933271)
[»] chr5 (1 HSPs)
chr5 (214-262)||(35023715-35023763)


Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 13 - 410
Target Start/End: Original strand, 3675423 - 3675817
Alignment:
Q  13 aatatccaattaacttcacaagatgtggatgacttagttgtccaagaaatataatctctgcctagaaaataaaaatatgttccaaacaacannnnnnnnn 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||             
T  3675423 aatatccaattaacttcacaagatgtggatgacttagttgtccaagaaatataatctctgcctagaaaataaaaatatgttcaaaacaacatttttttag 3675522  T
Q  113 nnnnnnnnnnnnccacaaaaattgtggtattttgtcatggaaaaaagtaatcttatagcatatgtttggttcggcaatgaaattcataaaatcccgatga 212  Q
                |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||    
T  3675523 atatatttttt-ccacaaaaattgtggtattttgtcatggaaaaaagtaatctta--gcatatgtttggttcggcaatgaaattcataaaattccgatga 3675619  T
Q  213 tccatcgtgattttgacaaaaattatactttaaagcttcaacaaaattatagtgaaaccgtaattttgctcaatcaattgccaatccaaacatacgcttc 312  Q
    |||||||||||||||||||||| ||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3675620 tccatcgtgattttgacaaaaactatactttagagctttaacaaaatcatagtgaaaccgtaattttgctcaatcaattgccaatccaaacatacgcttc 3675719  T
Q  313 gtaaactaaaagggtgcatcagaaagctaaccagccactctctatgaccttgcaagccatccaagtccaaacatttaacagctacagtttgagccttt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3675720 gtaaactaaaagggtgcatcagaaagctaaccagccactctctatgaccttgcaagccatccaagtccaaacatttaacagctacagtttgagccttt 3675817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 3078969 - 3078928
Alignment:
Q  214 ccatcgtgattttgacaaaaattatactttaaagcttcaaca 255  Q
    ||||| |||||||||||||||||| ||||| |||||||||||    
T  3078969 ccatcatgattttgacaaaaattacactttgaagcttcaaca 3078928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 48553375 - 48553314
Alignment:
Q  15 tatccaattaacttcacaagatgtggatgacttagttgtccaagaaatataatctctgccta 76  Q
    |||||||||||||| |||||||||||||| || || ||||||||||||||||||||||||||    
T  48553375 tatccaattaacttgacaagatgtggatgtctaagctgtccaagaaatataatctctgccta 48553314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 261
Target Start/End: Complemental strand, 1573965 - 1573924
Alignment:
Q  220 tgattttgacaaaaattatactttaaagcttcaacaaaatta 261  Q
    |||||||||||||| |||||||||||||||| | ||||||||    
T  1573965 tgattttgacaaaagttatactttaaagctttatcaaaatta 1573924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 51938995 - 51939043
Alignment:
Q  13 aatatccaattaacttcacaagatgtggatgacttagttgtccaagaaa 61  Q
    |||||||||| ||||||||||| ||| |||| |||||||| ||||||||    
T  51938995 aatatccaatcaacttcacaaggtgttgatgtcttagttgaccaagaaa 51939043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 261
Target Start/End: Complemental strand, 27161003 - 27160963
Alignment:
Q  221 gattttgacaaaaattatactttaaagcttcaacaaaatta 261  Q
    ||||||| ||||| ||||||||| |||||||||||||||||    
T  27161003 gattttggcaaaagttatactttgaagcttcaacaaaatta 27160963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 34444304 - 34444344
Alignment:
Q  222 attttgacaaaaattatactttaaagcttcaacaaaattat 262  Q
    ||||||| |||||||| |||||||| |||||||||||||||    
T  34444304 attttgataaaaattacactttaaaacttcaacaaaattat 34444344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 5933271 - 5933231
Alignment:
Q  219 gtgattttgacaaaaattatactttaaagcttcaacaaaat 259  Q
    |||||||||||||||||||||||||  ||||| ||||||||    
T  5933271 gtgattttgacaaaaattatactttgtagctttaacaaaat 5933231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 35023763 - 35023715
Alignment:
Q  214 ccatcgtgattttgacaaaaattatactttaaagcttcaacaaaattat 262  Q
    |||| |||| ||||||||||  |||||||||||||||||| ||||||||    
T  35023763 ccatggtgactttgacaaaagctatactttaaagcttcaataaaattat 35023715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University