View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2926_high_21 (Length: 397)
Name: NF2926_high_21
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2926_high_21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 55718346 - 55717950
Alignment:
| Q |
1 |
cggattattccatcggaaccgttaatccgtaaagaaactaatgaaaacaatactataactacgcttttagctgctcatgtttatggattcggttacgatt |
100 |
Q |
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| T |
55718346 |
cggattattccatcggaaccgttaatccgtaaagaaactaatgaaaacaatactataactacgcttttagctgctcatgtttatggattcggttacgatt |
55718247 |
T |
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| Q |
101 |
ctgctacggatgattataaattggttagcatttcgtattttgttgatctacataatcgtagttttgattcacatgttaagatttatactatgagaactga |
200 |
Q |
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| T |
55718246 |
ctgctacggatgattataaattggttagcatttcgtattttgttgatctacataatcgtagttttgattcacatgttaagatttatactatgagaactga |
55718147 |
T |
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| Q |
201 |
tgtttggaaaacgcttccaagtatgccttatgctttgtgttgtgctagaactatgggggtttttgtttctggtgctttgcattgggttgtaactcgagat |
300 |
Q |
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| T |
55718146 |
tgtttggaaaacgcttccaagtatgccttatgctttgtgttgtgctagaactatgggggtttttgtttctggtgctttgcattgggttgtaactcgagat |
55718047 |
T |
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| Q |
301 |
cttgaaccggaatcacgtgatttgatagttgcttttgatttaaggtttgaggtttttagggaagtggcgcttccggggactgtggatgggaaatttg |
397 |
Q |
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| T |
55718046 |
cttgaaccggaatcacgtgatttgatagttgcttttgatttaaggtttgaggtttttagggaagtggcgcttccggggactgtagatgggaaatttg |
55717950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 267
Target Start/End: Complemental strand, 9365009 - 9364955
Alignment:
| Q |
213 |
gcttccaagtatgccttatgctttgtgttgtgctagaactatgggggtttttgtt |
267 |
Q |
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| T |
9365009 |
gcttcctagtatgaattatgctctttgttgtgctagaactatgggtgtttttgtt |
9364955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 170
Target Start/End: Complemental strand, 9365152 - 9365052
Alignment:
| Q |
70 |
gctgctcatgtttatggattcggttacgattctgctacggatgattataaattggttagcatttcgtattttgttgatctacataatcgtagttttgatt |
169 |
Q |
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||||||| |||| ||||||| |||||||||||| | | | ||||||||| | ||||| || || |||||||||||| |||| || ||||| ||||||| |
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| T |
9365152 |
gctgctcgtgttcatggatttggttacgattcttttgctggagattataaacttgttagaatctcttattttgttgatttacagaaccgtagctttgatt |
9365053 |
T |
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| Q |
170 |
c |
170 |
Q |
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| T |
9365052 |
c |
9365052 |
T |
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