View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2926_high_28 (Length: 354)
Name: NF2926_high_28
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2926_high_28 |
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| [»] scaffold0224 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 11 - 340
Target Start/End: Complemental strand, 14008728 - 14008399
Alignment:
| Q |
11 |
cagagattcgagttcaaccactgagtaagcgccaaattgagagaaagatttggttcagagatttcaagttcaacgaaaaggattgagaaaaagattgagg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14008728 |
cagagattcgagttcaaccactgagtaagcgccaaattgagagaaagatttggttcagagatttcaagttcaacgaaaaggattgagaaaaagattgagg |
14008629 |
T |
|
| Q |
111 |
gcgattcacctgtttcttgagagattgagagaaagccaaaactttttatggagagattcatagtttctgaagatttgattgttggaataaaaacagtttg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14008628 |
gcgattcacctgtttcttgagagattgagagaaagccaaaactttttatggagagattcatagtttctgaagatttgattgttggaataaaaacagtttg |
14008529 |
T |
|
| Q |
211 |
ggggaaacctttggggcttagtgcttctgatttgtttccttgggcagtgaagaggatgatatatgtttcaattgtttgtttcccatgacattggtattga |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14008528 |
ggggaaacctttggggcttagtgcttctgatttgtttccttgggcagtgaagaggatgatatatgtttcaattgtttgtttcccatgacattggtattga |
14008429 |
T |
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| Q |
311 |
acactttgaaaacacgcgtggcatgaatat |
340 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
14008428 |
acactttgaaaacacgcgtggcatgaatat |
14008399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 284
Target Start/End: Original strand, 42935565 - 42935829
Alignment:
| Q |
11 |
cagagattcgagttcaaccactgagtaagcg-ccaaattgagagaaagatttggttcagagatttcaagttcaacgaaaaggattgagaaaaagattgag |
109 |
Q |
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| T |
42935565 |
cagagattcgagtttaacgactgagtaagcggccaaattgagagaaagatttggttaagagatttcaagttcaacgaaa------------aagattgag |
42935652 |
T |
|
| Q |
110 |
ggcgattcacctgtttcttgagagattgagagaaagccaaaactttttatggagagattcatagtttctgaagatttgattgttgg--aataaaaacagt |
207 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
42935653 |
ggcgagtcacctgtttcttgagagattgagagaaagccaaaactttttatggagagattcatagtttctgaagatttgattgttggaaaaaaaaaacagt |
42935752 |
T |
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| Q |
208 |
ttgggggaaacctttggggcttagtgcttctgatttgtttccttgggcagtgaagaggatgatatatgtttcaattg |
284 |
Q |
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| T |
42935753 |
ttgggggaaacctttggggcttagtgcttctgattcgtttccttgggcagtgaagaggatgatatatatttcaattg |
42935829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 55 - 273
Target Start/End: Original strand, 35241872 - 35242091
Alignment:
| Q |
55 |
aagatttggttcagagatttcaagttcaacgaaaaggattgagaaaaagattgagggcgattcacctgtttcttgagagattgagagaaagccaaaactt |
154 |
Q |
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|||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
35241872 |
aagatttgattcagagatttcaagttcaacaaaaaggattgagataaagattgagggcgattcacctgtttctggaaagattgagagaaagccaaaactt |
35241971 |
T |
|
| Q |
155 |
tttatggagagattcatagtttctgaagatttgattgttggaataaaaacagtttgggggaaa-cctttggggcttagtgcttctga-tttgtttccttg |
252 |
Q |
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||| ||||||||||||||||| ||||||||| || |||| | | ||||||||||||| ||||| ||||| ||||||||||||||| ||| ||||||| |
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| T |
35241972 |
tttctggagagattcatagttcctgaagattcgagtgtttg-agaaaaacagtttggaggaaatgttttggagcttagtgcttctgattttttttcctta |
35242070 |
T |
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| Q |
253 |
ggcagtgaagaggatgatata |
273 |
Q |
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| T |
35242071 |
gggagtgaagaggatgatata |
35242091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 280 - 336
Target Start/End: Original strand, 42935867 - 42935923
Alignment:
| Q |
280 |
aattgtttgtttcccatgacattggtattgaacactttgaaaacacgcgtggcatga |
336 |
Q |
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| T |
42935867 |
aattgtttgtttcccatgacattggtattgaacactttggaaacacgcgtgacatga |
42935923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 284
Target Start/End: Complemental strand, 11206 - 10942
Alignment:
| Q |
11 |
cagagattcgagttcaaccactgagtaagcg-ccaaattgagagaaagatttggttcagagatttcaagttcaacgaaaaggattgagaaaaagattgag |
109 |
Q |
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|||||||||||||| ||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
11206 |
cagagattcgagtttaacgactgagtaagcggccaaattgagagaaagatttggttaagagatttcaagttcaacgaaaa------------agattgag |
11119 |
T |
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| Q |
110 |
ggcgattcacctgtttcttgagagattgagagaaagccaaaactttttatggagagattcatagtttctgaagatttgattgttgg--aataaaaacagt |
207 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
11118 |
ggcgagtcacctgtttcttgagagattgagagaaagccaaaactttttatggagagattcatagtttctgaagatttgattgttggaaaaaaaaaacagt |
11019 |
T |
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| Q |
208 |
ttgggggaaacctttggggcttagtgcttctgatttgtttccttgggcagtgaagaggatgatatatgtttcaattg |
284 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11018 |
ttgggggaaacctttggggcttagtgcttctgattcgtttccttgggcagtgaagaggatgatatatatttcaattg |
10942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 280 - 336
Target Start/End: Complemental strand, 10904 - 10848
Alignment:
| Q |
280 |
aattgtttgtttcccatgacattggtattgaacactttgaaaacacgcgtggcatga |
336 |
Q |
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| T |
10904 |
aattgtttgtttcccatgacattggtattgaacactttggaaacacgcgtgacatga |
10848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 49020397 - 49020289
Alignment:
| Q |
11 |
cagagattcgagttcaaccactgagtaagcgccaaattgagagaaagatttggttcagagatttcaagttcaacgaaaaggattgagaaaaagattgagg |
110 |
Q |
| |
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||||||||||||||||| ||||| | ||| || |||| ||||| ||||| |||| ||||||||| ||||| ||||| ||| |||| ||||||||||| |
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| T |
49020397 |
cagagattcgagttcaatgactgattgagcatcagattgcaagaaatatttgattcaaagatttcaaattcaatgaaaaagatggagagaaagattgagg |
49020298 |
T |
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| Q |
111 |
gcgattcac |
119 |
Q |
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||||||||| |
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| T |
49020297 |
gcgattcac |
49020289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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