View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2926_high_3 (Length: 696)

Name: NF2926_high_3
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2926_high_3
NF2926_high_3
[»] chr4 (1 HSPs)
chr4 (1-689)||(53788246-53788934)


Alignment Details
Target: chr4 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 1 - 689
Target Start/End: Original strand, 53788246 - 53788934
Alignment:
Q  1 tccatggaaatacattagtattatttgctagtaagtactcggttgtattgcagtgtttcattcatcatcttaaactaatagagttgaactttggctaaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  53788246 tccatggaaatacattagtattatttgctagtaagtactcggttgtattgcagtgtttcattcatcatcttaaactaatagagttgaactttggctgaga 53788345  T
Q  101 aaacgtggtgagtaatggtacccactcactctatctttgctatgatgtgaagtgtgagaaccggggatcccaatataagtgagtcgaacaccacacttta 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  53788346 aaccgtggtgagtaatggtacccactcactctatctttgctatgatgtgaagtgtgagaaccgggaatcccaatataagtgagtccaacaccacacttta 53788445  T
Q  201 acataaaaccttaagatattgaattttatggatcctataatttataaaattcaatccccannnnnnnaagtaaggtgaaacttttaattcacactttcta 300  Q
    || |||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||       |||||| ||||||||||||||||||||||||||    
T  53788446 acctaaaaccttaagatattgga-tttatgggtcctataatttataaaattcaatccccatttttctaagtaacgtgaaacttttaattcacactttcta 53788544  T
Q  301 cacaacaatcttcgtctcatgtataaatataagtatgtcaattcattatgctatcactcaaggaagttttttcatttacatacacttacttgcatcgttg 400  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||  |||| |||||||||||||||| |||||||||||||||||| |||||    
T  53788545 cacaacaatcttcttctcatgtgtaaatataagtatgtcaattcattatgctcccacttaaggaagttttttcatctacatacacttacttgcaccgttg 53788644  T
Q  401 gtgtgacattcagcagagcacgccgtcaaaacacattgatagaaagactttcaacacaaa-aaccgatcaaattcttattaaatcatgatgtaagatacc 499  Q
    |||||||||||||  ||||||||| |||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  53788645 gtgtgacattcagtggagcacgccatcaaaacactgtgatagaaagactttcaacacaaagaaccgatcaaattcttattaaatcatcatgtaagatacc 53788744  T
Q  500 acctttgtgtcaagatggggagtccggaggatcatcctcctcgtgacccaacacttttgaatctccttacacgttcgctccacccacacatctaggcctt 599  Q
    |||||||    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53788745 acctttgcaaaaagatggggagtccggaggattatcctcctcgtgacccaacacttttgaatctccttacacgttcgctccacccacacatctaggcctt 53788844  T
Q  600 tttgtatgattcatcaataccatactatgtcatttgattgtcgtcttctttttattctattattccaatatacttctctcattcatttca 689  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  53788845 tttgtatgattcatcaataccataccatgtcatttgattgtcgtcttctttttattctattattccactatacttctctcattcatttca 53788934  T

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