View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2926_high_35 (Length: 316)
Name: NF2926_high_35
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2926_high_35 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 15 - 278
Target Start/End: Complemental strand, 2103867 - 2103604
Alignment:
| Q |
15 |
aaccaaacagaattgcaaaataacacaattttgaagaagcggataaggaaaactgcataagaatataacaaaaacattgtgttaattgtaaaaccaatga |
114 |
Q |
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| T |
2103867 |
aaccaaacagaattgcaaaataacacaattttgaagaagcggataaggaaaactgcataagaatataacaaaaacattgtgttaattgtaaaaccaatga |
2103768 |
T |
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| Q |
115 |
atcctcaccgcaacaaaagagactaccaagttgttaaatcttgctatcacaaggcgcacttagtgctcatataattttatcatttagcccaacaaattac |
214 |
Q |
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| T |
2103767 |
atcctcaccgcaacaaaagagactaccaagttgttaaatcttgctatcacaaggcgcacttagtgctcatataattttatcatttagcccaacaaattac |
2103668 |
T |
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| Q |
215 |
cataaagattgaactaataatacaaaacttgttctataacctcaaaaatgttgtatcacatttt |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2103667 |
cataaagattgaactaataatacaaaacttgttctataacctcaaaaatgttgtatcacatttt |
2103604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 196 - 306
Target Start/End: Complemental strand, 2103493 - 2103383
Alignment:
| Q |
196 |
atttagcccaacaaattaccataaagattgaactaataatacaaaacttgttctataacctcaaaaatgttgtatcacatttttgtaatacacacaatat |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2103493 |
atttagcccaacaaattaccataaagattgaactaataatacaaaacttgttctataacctcaaaaatgttgtatcacatttttgtaatacacacaatat |
2103394 |
T |
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| Q |
296 |
atatgtctgtg |
306 |
Q |
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| T |
2103393 |
atatgtctgtg |
2103383 |
T |
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