View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2926_high_37 (Length: 296)
Name: NF2926_high_37
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2926_high_37 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 41132974 - 41133256
Alignment:
| Q |
1 |
acaattagccgaactatgatcaattgtttgtgttcttgtgtacgcttacatatctgtttaagttagaggcggnnnnnnnnnnn--ctagtaacaaaacac |
98 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41132974 |
acaattaaccgaactatgatcaattgtttgtgtttttgtgtacgcttacatatctgtttaagttagaggcggtatttttttttttctagtaacaaaacac |
41133073 |
T |
|
| Q |
99 |
gtttctattaataatattgaaaaataaatgtgaaaaccataaaatttacttaccattaagaaggcttcaaaatcaacatcagttggaaaatcattgcctg |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
41133074 |
gtttctattaataatattgaaaaataaatgtgaaaaccataaaatttacttaccgttaagaaggcttcaaaatcaacatcagttgtaaaatcattgcctg |
41133173 |
T |
|
| Q |
199 |
attcattcaagatccccctaatctcatcttcactgtacatatctatgaatgcctttagcttcatcattaaagatggtaaatct |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41133174 |
attcattcaagatccccctaatctcatcttcactgtacatatctacgaatgcctttagcttcatcattaaagatggtaaatct |
41133256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University