View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2926_high_41 (Length: 290)
Name: NF2926_high_41
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2926_high_41 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 270
Target Start/End: Original strand, 34819671 - 34819922
Alignment:
| Q |
19 |
cacagagcgcaaacaagaaacactagcatcatgaaacatattggagtgattagacttccttgttacgtcaaaatcttcataaaggttgaaatgatccttc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
34819671 |
cacagagcgcaaacaagaaacactagcatcatgaaacatattggagtgattagacttccttgttgcctcaaaatcttcataaaggttgaaatgatccttc |
34819770 |
T |
|
| Q |
119 |
acgaagccagcacgatcgaagttcctgttccacaaggagccgccgatctcaacctcaagaacgcactcgaccttcttcttgttggcctcgccttcataac |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || || |
|
|
| T |
34819771 |
acgaagccagcacgatcgaagttcctgttccacaaggagccgccgatctcaacctcaagaacgcactcgacattcttcttgttggcctcgcctttatcac |
34819870 |
T |
|
| Q |
219 |
tcttccctttcttctttaaaggacatgcctcagcgagttgatggtcaatctt |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34819871 |
tcttccctttcttctttaaaggacatgcctcaacgagttgatggtcaatctt |
34819922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 191 - 266
Target Start/End: Original strand, 34820119 - 34820194
Alignment:
| Q |
191 |
ttcttcttgttggcctcgccttcataactcttccctttcttctttaaaggacatgcctcagcgagttgatggtcaa |
266 |
Q |
| |
|
||||||||| | | |||||||| || ||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
34820119 |
ttcttcttggttgtctcgcctttatcactcttccctttcttctttaaaggagacgcctcagcgagttgatggtcaa |
34820194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 128
Target Start/End: Original strand, 22080680 - 22080743
Alignment:
| Q |
65 |
tgattagacttccttgttacgtcaaaatcttcataaaggttgaaatgatccttcacgaagccag |
128 |
Q |
| |
|
|||||||||||||| | | | |||||||| ||| ||||||||||||||| ||||||||||||| |
|
|
| T |
22080680 |
tgattagacttcctcgctgcctcaaaatcctcaggaaggttgaaatgatctttcacgaagccag |
22080743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University