View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2926_high_48 (Length: 262)

Name: NF2926_high_48
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2926_high_48
NF2926_high_48
[»] chr7 (3 HSPs)
chr7 (21-246)||(3799339-3799577)
chr7 (56-171)||(44002529-44002645)
chr7 (57-175)||(28105950-28106067)
[»] chr8 (2 HSPs)
chr8 (56-175)||(12268531-12268649)
chr8 (42-154)||(7754842-7754954)
[»] chr2 (2 HSPs)
chr2 (30-171)||(26261622-26261762)
chr2 (14-171)||(24233380-24233539)
[»] chr1 (2 HSPs)
chr1 (30-175)||(50371470-50371616)
chr1 (14-137)||(8115603-8115729)
[»] chr5 (3 HSPs)
chr5 (31-148)||(17463207-17463324)
chr5 (30-95)||(4177569-4177634)
chr5 (87-175)||(13288780-13288867)
[»] chr4 (2 HSPs)
chr4 (14-171)||(9925445-9925602)
chr4 (121-153)||(10387212-10387244)


Alignment Details
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 21 - 246
Target Start/End: Original strand, 3799339 - 3799577
Alignment:
Q  21 gactgaaataaatgtaaaacttgaaattttagagtcatatattagcatcatat-------------accaaaatttgttaacattcaatatccaacatat 107  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||             |||||||||||| |||||||||| ||||||||||    
T  3799339 gactgaaataaatgtaaaacttgaaatttaagagtcatatattagcatcatatgccaaaattatataccaaaatttgtcaacattcaatgtccaacatat 3799438  T
Q  108 aataaaaataacaattatatttttcaacatccaacatataacaaaaaatttcgacattcaacatatatcaaaatcatataaacaaaatttgcaattatac 207  Q
    || ||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3799439 aacaaaaatagcaattatatatttcaacatccaacatataacaaaaattttcgacattcaacatatatcaaaatcatataaacaaaatttgcaattatac 3799538  T
Q  208 actggcattttaaaaactaaacactaataagcattcaac 246  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  3799539 actggcattttaaaaactaaatactaataagcattcaac 3799577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 171
Target Start/End: Original strand, 44002529 - 44002645
Alignment:
Q  56 catatattagcatcatataccaaaatttgttaacattcaatatccaacatata--ataaaaataacaattatatttttcaacatccaacatataacaaaa 153  Q
    |||||||||||| |||||||||||| |||| |||||||||  |||||||||||  | |||| || ||||||||||||||||||| ||||||||||| |||    
T  44002529 catatattagcaacatataccaaaacttgtcaacattcaacgtccaacatatataacaaaattagcaattatatttttcaacattcaacatataac-aaa 44002627  T
Q  154 aatttcgacattcaacat 171  Q
    ||||||||||||||||||    
T  44002628 aatttcgacattcaacat 44002645  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 175
Target Start/End: Complemental strand, 28106067 - 28105950
Alignment:
Q  57 atatattagcatcatataccaaaatttgttaacattcaatatccaacatataataaaaataacaattatatttttcaacatccaacatataacaaaaaat 156  Q
    |||||||||||  ||||||||||||||||  | ||||||  ||||   ||||| ||||  | ||||| ||||||||||||| |||||||||||| |||||    
T  28106067 atatattagcaatatataccaaaatttgtcgatattcaacttccattgtataacaaaatcatcaattgtatttttcaacattcaacatataaca-aaaat 28105969  T
Q  157 ttcgacattcaacatatat 175  Q
    |||||||||| ||||||||    
T  28105968 ttcgacattcgacatatat 28105950  T

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Target: chr8 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 56 - 175
Target Start/End: Original strand, 12268531 - 12268649
Alignment:
Q  56 catatattagcatcatataccaaaatttgttaacattcaatatccaacatataataaaaataacaattatatttttcaacatccaacatataacaaaaaa 155  Q
    |||||||||||| ||||||||||||||||| |||||||||  |||| ||||||| |||| || ||||||||||||||||| | ||||||||||| |||||    
T  12268531 catatattagcaacatataccaaaatttgtcaacattcaacgtccatcatataacaaaattagcaattatatttttcaaccttcaacatataac-aaaaa 12268629  T
Q  156 tttcgacattcaacatatat 175  Q
    ||||||||||||||||||||    
T  12268630 tttcgacattcaacatatat 12268649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 154
Target Start/End: Original strand, 7754842 - 7754954
Alignment:
Q  42 tgaaattttagagtcatatattagcatcatataccaaaatttgttaacattcaatatccaacatataataaaaataacaattatatttttcaacatccaa 141  Q
    ||||||||  ||| |||||||||||| ||||||||||||||||| |||||||||  ||||   | ||| |||| || ||||||||||||||||  | |||    
T  7754842 tgaaatttaggaggcatatattagcaacatataccaaaatttgtcaacattcaacgtccactttgtaacaaaattagcaattatatttttcaatgttcaa 7754941  T
Q  142 catataacaaaaa 154  Q
    |||||||||||||    
T  7754942 catataacaaaaa 7754954  T

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Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 30 - 171
Target Start/End: Complemental strand, 26261762 - 26261622
Alignment:
Q  30 aaatgtaaaacttgaaattttagagtcatatattagcatcatataccaaaatttgttaacattcaatatccaacatataataaaaataacaattatattt 129  Q
    ||||||| ||||||||||||  ||| |||||||| ||| ||||||||||||||||| |||||||||  |||| ||||||| |||| || |||||||||||    
T  26261762 aaatgtagaacttgaaatttaggaggcatatattggcaacatataccaaaatttgtcaacattcaacgtccaccatataagaaaattaccaattatattt 26261663  T
Q  130 ttcaacatccaacatataacaaaaaatttcgacattcaacat 171  Q
    |||||| | ||||||||||| | |||||||||||||||||||    
T  26261662 ttcaactttcaacatataac-ataaatttcgacattcaacat 26261622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 171
Target Start/End: Original strand, 24233380 - 24233539
Alignment:
Q  14 agaggaagactgaaataaatgtaaaacttgaaattttagagtcatatattagcatcatataccaaaatttgttaacattcaatatccaacatataataaa 113  Q
    ||||||||||||||| ||||||  |||  |||||||  ||| |||||||||||| ||||||||||||||||| ||||||||   ||||||||| || |||    
T  24233380 agaggaagactgaaa-aaatgtggaacccgaaatttaggagacatatattagcaacatataccaaaatttgtaaacattcatcgtccaacatacaacaaa 24233478  T
Q  114 ----aataacaattatatttttcaacatccaacatataacaaaaaatttcgacattcaacat 171  Q
        | || ||||||||||||||| ||  ||||||||||| |||| ||| ||||||||||||    
T  24233479 caagattagcaattatatttttcagcaatcaacatataac-aaaatttttgacattcaacat 24233539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 175
Target Start/End: Complemental strand, 50371616 - 50371470
Alignment:
Q  30 aaatgtaaaacttgaaattttagagtcatatattagcatcatataccaaaatttgttaacattcaatatccaacatataataaaaataacaattatattt 129  Q
    ||||||| ||| ||||||||  |||  ||||||||| | || |||||||||||| | ||||||||  ||||||||||||| |||| || |||||||||||    
T  50371616 aaatgtagaacctgaaatttaggagatatatattagtaacaaataccaaaatttatcaacattcagcatccaacatataacaaaattagcaattatattt 50371517  T
Q  130 ttcaacatccaacatataacaa-aaaatttcgacattcaacatatat 175  Q
    |||||||| ||||||||||||| |||| ||| |||||||||||||||    
T  50371516 ttcaacattcaacatataacaaaaaaaattcaacattcaacatatat 50371470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 14 - 137
Target Start/End: Complemental strand, 8115729 - 8115603
Alignment:
Q  14 agaggaagactgaa---ataaatgtaaaacttgaaattttagagtcatatattagcatcatataccaaaatttgttaacattcaatatccaacatataat 110  Q
    ||||||||||||||   | ||||||| ||| |||||||||  || |||||||||||| ||||||||||||||||| |||||||||  ||||||||||||     
T  8115729 agaggaagactgaaggaaaaaatgtagaacctgaaattttgaaggcatatattagcaacatataccaaaatttgtcaacattcaacgtccaacatataac 8115630  T
Q  111 aaaaataacaattatatttttcaacat 137  Q
    |||| || |||||||||||| ||||||    
T  8115629 aaaattagcaattatattttccaacat 8115603  T

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Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 31 - 148
Target Start/End: Complemental strand, 17463324 - 17463207
Alignment:
Q  31 aatgtaaaacttgaaattttagagtcatatattagcatcatataccaaaatttgttaacattcaatatccaacatataataaaaataacaattatatttt 130  Q
    |||||||||| | ||||||  ||| ||||||||||||  |||||||||||||||| ||||||||| | ||||||||||| |||| || ||||||||||||    
T  17463324 aatgtaaaacctaaaatttaggaggcatatattagcaatatataccaaaatttgtcaacattcaacacccaacatataacaaaattagcaattatatttt 17463225  T
Q  131 tcaacatccaacatataa 148  Q
    ||||||| ||||||||||    
T  17463224 tcaacattcaacatataa 17463207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 4177634 - 4177569
Alignment:
Q  30 aaatgtaaaacttgaaattttagagtcatatattagcatcatataccaaaatttgttaacattcaa 95  Q
    ||||||||||||||||||||  ||| |||||||||| | ||||||||||||||||| |||||||||    
T  4177634 aaatgtaaaacttgaaatttaggaggcatatattagtaacatataccaaaatttgtcaacattcaa 4177569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 175
Target Start/End: Complemental strand, 13288867 - 13288780
Alignment:
Q  87 aacattcaatatccaacatataataaaaataacaattatatttttcaacatccaacatataacaaaaaatttcgacattcaacatatat 175  Q
    |||||||||  |||| ||||||  |||| || |||||||||||||| || | ||||||||||  |||||||||| ||||||||||||||    
T  13288867 aacattcaacgtccatcatatagcaaaattagcaattatatttttcgaccttcaacatataa-taaaaatttcggcattcaacatatat 13288780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 171
Target Start/End: Complemental strand, 9925602 - 9925445
Alignment:
Q  14 agaggaagactgaaataaatgtaaaacttgaaattttag-agtcatatattagcatcatataccaaaatttgttaacattcaatatccaacatataataa 112  Q
    ||||||||||||||| |||| || ||| | ||| ||||| || ||||||||| |  |||||||| |||||||| |||||||||  | |||||||||| ||    
T  9925602 agaggaagactgaaaaaaatttagaacctaaaaatttaggaggcatatattaacgacatatacctaaatttgtcaacattcaacgttcaacatataacaa 9925503  T
Q  113 aaataacaattatatttttcaacatccaacatataacaaaaaatttcgacattcaacat 171  Q
    || |||||||||||||||||||||| |||| |||||| ||||| || ||||||||||||    
T  9925502 aattaacaattatatttttcaacattcaacgtataacgaaaaa-ttggacattcaacat 9925445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 10387244 - 10387212
Alignment:
Q  121 attatatttttcaacatccaacatataacaaaa 153  Q
    ||||||||||||||||| |||||||||||||||    
T  10387244 attatatttttcaacattcaacatataacaaaa 10387212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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