View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2926_high_6 (Length: 575)
Name: NF2926_high_6
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2926_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 11 - 522
Target Start/End: Original strand, 4143273 - 4143783
Alignment:
| Q |
11 |
cacagaagatatcacttgcagaagctttaacaggttacactgttcgtctcacaacactagatggcagggttctgaatgttcctattaacaatgtgattca |
110 |
Q |
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| T |
4143273 |
cacagaagatatcacttgcagaagctttaacaggttacactgttcgtctcacaacactagatggcagggttctgaatgttcctattaacaatgtgattca |
4143372 |
T |
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| Q |
111 |
tcctagctatgaagaggttattccaaaggaaggtatgcctattccaaaagatccttcaaagaagggtaatcttaggatcaaattcaatatcaagtttcca |
210 |
Q |
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| T |
4143373 |
tcctagctatgaagaggttattccaaaggaaggtatgcctattccaaaagatccttcaaagaagggtaatcttaggatcaaattcaatatcaagtttcca |
4143472 |
T |
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| Q |
211 |
gcaaggttgacttctgagcagaaaattggaatcaagaaacttctggcaccgtagtggatcccacaagcatccattgtgaagtgtatagtcttccaaacct |
310 |
Q |
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| T |
4143473 |
gcaaggttgacttctgagcagaaaattggaatcaagaaacttctggcaccgtagtggat-ccacaagcatccattgtgaagtgtatagtcttccaaacct |
4143571 |
T |
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| Q |
311 |
tagtttgagttctttcacaacttttcttataggannnnnnnnnnnnggtatgtagtttttgtgtgtaatttgttgcacaccttcaacattgaggattgag |
410 |
Q |
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| T |
4143572 |
tagtttgagttctttcacaacttttcttataggattttttatttttggtatgtagtttttgtgtgtaatttgtttcacaccttcaacattgaggactgag |
4143671 |
T |
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| Q |
411 |
gaatcacatttctagagttcttaaaattgacgtgtgattggaatatgcattgttcattagtttaatacttttacataaaaatttatgccagtatgtggaa |
510 |
Q |
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| T |
4143672 |
gaatcacatttctagagttcttaaaattgacgtgtgattggaatatgcattgttcattagtttaatacttttacataaaaagttatgccagtatgtggaa |
4143771 |
T |
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| Q |
511 |
atgaattggtat |
522 |
Q |
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| T |
4143772 |
atgaattggtat |
4143783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 487 - 564
Target Start/End: Original strand, 4143803 - 4143878
Alignment:
| Q |
487 |
aaaaatttatgccagtatgtggaaatgaattggtatatatcattatgaaacnnnnnnnttatacagaatgagataaat |
564 |
Q |
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| T |
4143803 |
aaaaagttatgccagtatgtggaaacgaattgg--tatatcattatgaaagaaaataattatacagaatgagataaat |
4143878 |
T |
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