View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2926_high_73 (Length: 239)
Name: NF2926_high_73
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2926_high_73 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 34 - 221
Target Start/End: Complemental strand, 43750099 - 43749912
Alignment:
| Q |
34 |
atcttaaagtctagacaaaacaacaaacaatacctacttacattttgtgtcagtagaaaaacaatccaaattaaagaatgaaaaagagatgaaagaaaga |
133 |
Q |
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| T |
43750099 |
atcttaaagtctagacaaaacaacaaacaatacctacttacattttgtgtcagtagaaaaacaatccaaattaaagaatgaaaaagagatgaaagaaaga |
43750000 |
T |
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| Q |
134 |
attctttacaagggttccatcttgaatatttgttgaggtaacaatcttaaagaaacggataaaagaatgcatatttcttcggttgcaa |
221 |
Q |
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| T |
43749999 |
attctttacaagggttccatcttgaatatttgttgaggtaacaatcttaaagaaacggataaaagaatgcatatttcttgggttgcaa |
43749912 |
T |
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Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 139 - 190
Target Start/End: Complemental strand, 49163690 - 49163639
Alignment:
| Q |
139 |
ttacaagggttccatcttgaatatttgttgaggtaacaatcttaaagaaacg |
190 |
Q |
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| T |
49163690 |
ttacaagggttccatcttgaatatttgttgaggtaacaatcttaaagaaacg |
49163639 |
T |
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