View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2926_high_77 (Length: 236)
Name: NF2926_high_77
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2926_high_77 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 21 - 183
Target Start/End: Original strand, 38292623 - 38292785
Alignment:
| Q |
21 |
atcttcatttatgaaagatgataaagaataatcatttatatttatttcattcggcttcttctcccatggtacacgccctttagtattagatcctggtcca |
120 |
Q |
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| T |
38292623 |
atcttcatttatgaaagatgataaagaataatcatttatatttatttcattcggcttcttctcccatggtacacgcccttgagtattagatcctggtcca |
38292722 |
T |
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| Q |
121 |
gtgcaatccacttcagcatagatgaagttctttctgcatcattttgttttcaatgatcataag |
183 |
Q |
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| T |
38292723 |
gtacaatccacttcagcatagatgaagttctttctgcatcattttgttttcaattaacataag |
38292785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 21 - 169
Target Start/End: Original strand, 38300205 - 38300353
Alignment:
| Q |
21 |
atcttcatttatgaaagatgataaagaataatcatttatatttatttcattcggcttcttctcccatggtacacgccctttagtattagatcctggtcca |
120 |
Q |
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| T |
38300205 |
atcttcatttatgaaagatgataaagaataatcatttatatttatttcattcggcttcttctcccatggtacacgcccttgagtattagatcctggtcca |
38300304 |
T |
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| Q |
121 |
gtgcaatccacttcagcatagatgaagttctttctgcatcattttgttt |
169 |
Q |
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| T |
38300305 |
gtacaatccacttcagcatagatgaagttctttctgcatcattttgttt |
38300353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 38304413 - 38304558
Alignment:
| Q |
19 |
ccatcttcatttatgaaagatgataaagaataatcatttatatttatttcattcggcttcttctcccatggtacacgccctttagtattagatcctggtc |
118 |
Q |
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| T |
38304413 |
ccatcttcatttatgaaagatgataaagaataatcatttatgtttatttcattcggcttcttctcccaaggtacacgccctttagtattggaccctggtc |
38304512 |
T |
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| Q |
119 |
cagtgcaatccacttcagcatagatgaagttctttctgcatcattt |
164 |
Q |
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| T |
38304513 |
ctgtacaatcaacttcagcatagacgaagttgtttctgcatcattt |
38304558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 18745557 - 18745508
Alignment:
| Q |
19 |
ccatcttcatttatgaaagatgataaagaataatcatttatatttatttc |
68 |
Q |
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||||||| |||||||||||||||||||||||| || | |||||||||||| |
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| T |
18745557 |
ccatctttatttatgaaagatgataaagaatattcttgtatatttatttc |
18745508 |
T |
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