View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2926_high_81 (Length: 230)
Name: NF2926_high_81
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2926_high_81 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 42379737 - 42379967
Alignment:
| Q |
1 |
acaaagacaaagcgagctaaacgaagttactgctgttggggcgtgtatgttactgtcgtgttctttggtgtggataaaaaccataataacaagagaaggg |
100 |
Q |
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| T |
42379737 |
acaaagacaaagcgagctaaacgaagttactgctgttggggcgtgtgtgttactgtcgagttctttggtgtggataaaaaccataataacaagagaaggg |
42379836 |
T |
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| Q |
101 |
tcatgtgtctctcatcttatcttcttttctgggtacgttttctcatcgctcaaattcctgcagagggtatttaaatcaatgttctcttattctcata-tt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
42379837 |
tcatgtgtctctcatcttatcttcttttctgggtacgttttctcatcgctcaaattcctgtagagggtatttaaatcaatgttctcttattctcatattt |
42379936 |
T |
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| Q |
200 |
ttttccctttataataataattagatgattt |
230 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
42379937 |
ttttccctttataataataattagatgattt |
42379967 |
T |
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