View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2926_low_16 (Length: 449)
Name: NF2926_low_16
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2926_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 2 - 313
Target Start/End: Original strand, 37774776 - 37775087
Alignment:
| Q |
2 |
gtggaggagcagagaggcaatggatatggctgagagaagagcatttgatgcaggaaacgaaacggtgcgcagaggaagtggtggaaagagggttttcgta |
101 |
Q |
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| T |
37774776 |
gtggtggagaagagaggcaatggatatggctgagagaagagcatttgatgcaggaaacgaaacggtgcgcagaggaagtggtggaaagagggttttcgta |
37774875 |
T |
|
| Q |
102 |
gaattcgaagcaacaaggacagaatgatgatggatgaagacggaggacgcaggaagtgcagattcgacgatcgacgccgcgaacgacgacgttgtggaga |
201 |
Q |
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| T |
37774876 |
gaattcgaagcaacaaggacagaatgatgatggatgaagacggaggacgcaggaagtgcagattcgacgatcgacgccgcgaacgacgacgttgtggaga |
37774975 |
T |
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| Q |
202 |
agccaacggtctttgatgccgcagttacagcattcgcctttgacgaaggggaagatgttgggaggagattcagagagaatgggttttgatgatggaagat |
301 |
Q |
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| T |
37774976 |
agccaacggtctttgatgccgcagttacagcattcgcctttgacgaaggggaagatgttgggaggagattcagagagaatgggttttgatgatggaagat |
37775075 |
T |
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| Q |
302 |
tcatggtaatgg |
313 |
Q |
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| T |
37775076 |
tcatggtaatgg |
37775087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 383 - 431
Target Start/End: Original strand, 37775157 - 37775205
Alignment:
| Q |
383 |
ctagggtttcgaaggaagaagaagaagggattgaaacggataccctatg |
431 |
Q |
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| T |
37775157 |
ctagggtttcgaaggaagaagaagaagtgattgaaacggataccctatg |
37775205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 2 - 306
Target Start/End: Complemental strand, 8814837 - 8814533
Alignment:
| Q |
2 |
gtggaggagcagagaggcaatggatatggctgagagaagagcatttgatgcaggaaacgaaacggtgcgcagaggaagtggtggaaagagggttttcgta |
101 |
Q |
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| T |
8814837 |
gtggtggagaagagaggcaatggatatggctgagagaagagcatttgatgcaggagatgaaacagtgcgtagtggaagtggtggaaagagggttttcgta |
8814738 |
T |
|
| Q |
102 |
gaattcgaagcaacaaggacagaatgatgatggatgaagacggaggacgcaggaagtgcagattcgacgatcgacgccgcgaacgacgacgttgtggaga |
201 |
Q |
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| T |
8814737 |
gaatttgaagcaacaagggcagaatgatgatggatgaagacggaggacgcaagaggtgcagattccacgatcgacgccgcgaacaacaacgttgtggaga |
8814638 |
T |
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| Q |
202 |
agccaacggtctttgatgccgcagttacagcattcgcctttgacgaaggggaagatgttgggaggagattcagagagaatgggttttgatgatggaagat |
301 |
Q |
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||||| |||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
8814637 |
agccagcggtctttgatgccacagttacaacatttgcctttgacgaaggggaagatgttgggaggggatttagagagaatgggttttgatgatggaagat |
8814538 |
T |
|
| Q |
302 |
tcatg |
306 |
Q |
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||||| |
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| T |
8814537 |
tcatg |
8814533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 236 - 304
Target Start/End: Complemental strand, 16603202 - 16603134
Alignment:
| Q |
236 |
cgcctttgacgaaggggaagatgttgggaggagattcagagagaatgggttttgatgatggaagattca |
304 |
Q |
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| T |
16603202 |
cgcctttgacgaaggggaatatgttgggaggggattcagagagaatgggttctgattatggaagattca |
16603134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 236 - 306
Target Start/End: Original strand, 43393700 - 43393770
Alignment:
| Q |
236 |
cgcctttgacgaaggggaagatgttgggaggagattcagagagaatgggttttgatgatggaagattcatg |
306 |
Q |
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| T |
43393700 |
cgcctttgacgaaggggaatatgttgggaggggattcaaagggaatgggttttgattatggaagattcatg |
43393770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 287
Target Start/End: Original strand, 23073111 - 23073162
Alignment:
| Q |
236 |
cgcctttgacgaaggggaagatgttgggaggagattcagagagaatgggttt |
287 |
Q |
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| T |
23073111 |
cgcctttgacgaaggggaatatgttgggaggggattcaaagggaatgggttt |
23073162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 236 - 306
Target Start/End: Complemental strand, 18573363 - 18573293
Alignment:
| Q |
236 |
cgcctttgacgaaggggaagatgttgggaggagattcagagagaatgggttttgatgatggaagattcatg |
306 |
Q |
| |
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||||||||||||||||||| ||||||||||| |||||| || |||| ||||||||| |||||||||||||| |
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| T |
18573363 |
cgcctttgacgaaggggaatatgttgggaggggattcaaagggaataggttttgattatggaagattcatg |
18573293 |
T |
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