View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2926_low_19 (Length: 424)
Name: NF2926_low_19
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2926_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 43 - 413
Target Start/End: Complemental strand, 37920857 - 37920487
Alignment:
| Q |
43 |
tttgttgttattattgcctaatgatccatccacgcccttcgtacatggtttggttttagtcattttgggattaattactttctggtgtgcaccagcaact |
142 |
Q |
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| T |
37920857 |
tttgttgttattattgcctaatgatccatccacgcccttcgtacatggtttggttttagtcattttgggattaattactttctggtgtgcaccagcaact |
37920758 |
T |
|
| Q |
143 |
aatgatccaatatttgcagaaatagtccctgagaaatcgcgaacggctatatatgctttggatcgatcttttgagagtacattggcttcttttgctccac |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37920757 |
aatgatccaatatttgcagaaatagtccctgagaaatcgcgagcggctatatatgctttggatcgatcttttgagagtacattggcttcttttgctccac |
37920658 |
T |
|
| Q |
243 |
caattgttggcgttttagctcaacatgtttatggttataaaccaattcaaaaaggatcttcaaattctgtgaagatcattgaaactgatagagaaaatgc |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37920657 |
caattgttggcgttttagctcaacatgtttatggttataaaccaattccaaaaggatcttcaaattctgtgaagatcattgaaactgatagagaaaatgc |
37920558 |
T |
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| Q |
343 |
ggcatcacttgctaaggcactttatagcacaattgcaattccaattgcagtatgtgtcttcatttattcat |
413 |
Q |
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| T |
37920557 |
ggcatcacttgctaaggcactttatagcacaattgcaattccaattgcagtatgtgtcttcatttattcat |
37920487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 148 - 368
Target Start/End: Complemental strand, 37934463 - 37934246
Alignment:
| Q |
148 |
tccaatatttgcagaaatagtccctgagaaatcgcgaacggctatatatgctttggatcgatcttttgagagtacattggcttcttttgctccaccaatt |
247 |
Q |
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| T |
37934463 |
tccaatatttgcagaaatagtccctgagaagtcccggacggcaatatatgctttggatcgatctttcgagtctatattggcatcgtttgctccgcctgtt |
37934364 |
T |
|
| Q |
248 |
gttggcgttttagctcaacatgtttatggttataaaccaattcaaaaaggatcttcaaattctgtgaagatcattgaaactgatagagaaaatgcggcat |
347 |
Q |
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||||| |||||||| |||||||||||||||||||||||||||| ||||||||| || ||||| || ||| |||| |||||||||||||| |||| |
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| T |
37934363 |
gttggagttttagcacaacatgtttatggttataaaccaattccaaaaggatcatcgggctctgttcag---attcaaacagatagagaaaatgctgcat |
37934267 |
T |
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| Q |
348 |
cacttgctaaggcactttata |
368 |
Q |
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|||| | ||||||||||||| |
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| T |
37934266 |
cactgtccaaggcactttata |
37934246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 148 - 360
Target Start/End: Complemental strand, 37924363 - 37924154
Alignment:
| Q |
148 |
tccaatatttgcagaaatagtccctgagaaatcgcgaacggctatatatgctttggatcgatcttttgagagtacattggcttcttttgctccaccaatt |
247 |
Q |
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||||||||||||||||||||| |||||||| || || || ||||||||||||||||||| |||||| ||| || |||| || |||||||| || || |
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| T |
37924363 |
tccaatatttgcagaaatagttcctgagaagtcccggacagctatatatgctttggatcaatctttcgagtctatattgcaatcatttgctcctcctgtt |
37924264 |
T |
|
| Q |
248 |
gttggcgttttagctcaacatgtttatggttataaaccaattcaaaaaggatcttcaaattctgtgaagatcattgaaactgatagagaaaatgcggcat |
347 |
Q |
| |
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||||| | || || ||| |||||| |||||||| |||| ||| |||||||||||| ||||||| | ||| ||||| ||||| |||||||| |||| |
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| T |
37924263 |
gttggattattggcacaaaatgtttttggttatagaccagttccaaaaggatcttctgattctgttgaaatc---gaaacagatagggaaaatgcagcat |
37924167 |
T |
|
| Q |
348 |
cacttgctaaggc |
360 |
Q |
| |
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|||| || ||||| |
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| T |
37924166 |
cactcgccaaggc |
37924154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 6497301 - 6497343
Alignment:
| Q |
5 |
gcagttccctccttccaatccctccatgcctgcacaaatttgt |
47 |
Q |
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| T |
6497301 |
gcagttccctccttccaattcctccatgcctgcacaaatttgt |
6497343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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