View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2926_low_20 (Length: 422)

Name: NF2926_low_20
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2926_low_20
NF2926_low_20
[»] chr7 (2 HSPs)
chr7 (18-406)||(1322618-1323007)
chr7 (228-275)||(10289260-10289307)
[»] chr5 (1 HSPs)
chr5 (26-209)||(28201412-28201599)
[»] chr8 (2 HSPs)
chr8 (64-167)||(26161922-26162027)
chr8 (321-392)||(26161678-26161749)
[»] chr1 (2 HSPs)
chr1 (71-167)||(36386566-36386663)
chr1 (228-275)||(43407836-43407883)
[»] chr3 (3 HSPs)
chr3 (279-383)||(27758843-27758947)
chr3 (210-279)||(27758964-27759034)
chr3 (228-275)||(7337163-7337210)
[»] scaffold0054 (2 HSPs)
scaffold0054 (27-145)||(31681-31800)
scaffold0054 (323-406)||(31216-31299)
[»] chr6 (1 HSPs)
chr6 (336-406)||(21511077-21511147)


Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 406
Target Start/End: Original strand, 1322618 - 1323007
Alignment:
Q  18 aggcacacaaaatgcatatgatatgaatgacatgaatcctatccaaccactaaggcaaacacaatcaactattaataatcatcatgcacatgacccaaaa 117  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||    
T  1322618 aggcacacaaaatgcatatgatatgaatgacatgaatgcaatccaaccactaaaacaaacacaatcaattattaataatcatcatgcacatgacccaaaa 1322717  T
Q  118 ccaatcttttcataaaactcatttttccattattttctttctttctttaatatatcaaaatctaacatttatttctcaaa-atcacaacacatgtttctt 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1322718 ccaatcttttcataaaactcatttttccattattttctttctttctttaatatatcaaaatctaacatttatttctcaaacatcacaacacatgtttctt 1322817  T
Q  217 cacatatatcattcacatcacatcctcatgcacaaatatcatataaaacataattaaaatcataaattttaccacttaaagttgtgttttacttttattt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  1322818 cacatatatcattcacatcacatcctcatgcacaaatatcatataaaacataattaaaatcataaattttaccacataaagttgtgttttactttcattt 1322917  T
Q  317 cttcttaacaacagttatgaatcatactctttaaattataacacctaacaattagttacaattatgataagaatggaaaagtgtccttac 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1322918 cttcttaacaacagttatgaatcatactctttaaattataacacctaacaattagttacaattatgataagtatggaaaagtgtccttac 1323007  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 275
Target Start/End: Original strand, 10289260 - 10289307
Alignment:
Q  228 ttcacatcacatcctcatgcacaaatatcatataaaacataattaaaa 275  Q
    |||||||||||||| ||| ||||| | |||||||||||||||||||||    
T  10289260 ttcacatcacatccacatacacaactttcatataaaacataattaaaa 10289307  T

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Target: chr5 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 26 - 209
Target Start/End: Complemental strand, 28201599 - 28201412
Alignment:
Q  26 aaaatgcatatgatatgaatgac-atgaatcctatccaaccactaaggcaaacacaatcaactattaataatcatcatgcacatgaccc-aaaaccaatc 123  Q
    ||||||||| ||| ||| ||||| ||| || | |||| |||||| |||||||||||||||| |||||||| |||||||||||||||||| ||||||||||    
T  28201599 aaaatgcatttgacatgcatgacgatggatgcaatcccaccacttaggcaaacacaatcaaatattaatattcatcatgcacatgacccaaaaaccaatc 28201500  T
Q  124 ttttcataaaactcatttttccattattttctttctttctttaatatatc-aaaatctaacatttatttctcaaa-atcacaacacat 209  Q
    ||||||||||||||   ||| ||||||||||||||||||||| ||  ||| |||||||||||||| ||||||||| ||||||||||||    
T  28201499 ttttcataaaactcgcattttcattattttctttctttctttgattcatcaaaaatctaacatttctttctcaaacatcacaacacat 28201412  T

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Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 64 - 167
Target Start/End: Complemental strand, 26162027 - 26161922
Alignment:
Q  64 ccactaaggcaaacacaatcaactattaataatcatcat-gcacatgacccaaaa-ccaatcttttcataaaactcatttttccattattttctttcttt 161  Q
    ||||| |||||||||||||||| ||||||||| |||||| ||||||||||||||| |||||||||||||||||||||  ||||| | |||||||||||||    
T  26162027 ccacttaggcaaacacaatcaaatattaataaccatcattgcacatgacccaaaaaccaatcttttcataaaactcacatttccttgattttctttcttt 26161928  T
Q  162 ctttaa 167  Q
    ||||||    
T  26161927 ctttaa 26161922  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 321 - 392
Target Start/End: Complemental strand, 26161749 - 26161678
Alignment:
Q  321 ttaacaacagttatgaatcatactctttaaattataacacctaacaattagttacaattatgataagaatgg 392  Q
    ||||||||| ||||||| |||||||||||||| |||| ||||||| |||||||||| |||||||||| ||||    
T  26161749 ttaacaacaattatgaaccatactctttaaatcataatacctaaccattagttacagttatgataagtatgg 26161678  T

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Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 71 - 167
Target Start/End: Original strand, 36386566 - 36386663
Alignment:
Q  71 ggcaaacacaatcaactattaataatcatcatgcacatgaccc-aaaaccaatcttttcataaaactcatttttccattattttctttctttctttaa 167  Q
    ||||||||||||||| ||||||||| ||||||||||||||||| |||| ||||||||||||||||||||  ||||| | |||||||||||| ||||||    
T  36386566 ggcaaacacaatcaaatattaataaccatcatgcacatgacccaaaaatcaatcttttcataaaactcacatttccttgattttctttcttcctttaa 36386663  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 275
Target Start/End: Original strand, 43407836 - 43407883
Alignment:
Q  228 ttcacatcacatcctcatgcacaaatatcatataaaacataattaaaa 275  Q
    |||||||||||||| ||| ||||| | |||||||||||||||||||||    
T  43407836 ttcacatcacatccacatacacaactttcatataaaacataattaaaa 43407883  T

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Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 279 - 383
Target Start/End: Complemental strand, 27758947 - 27758843
Alignment:
Q  279 taaattttaccacttaaagttgtgttttacttttatttcttcttaacaacagttatgaatcatactctttaaattataacacctaacaattagttacaat 378  Q
    ||||||||||||||||| ||||| ||||| ||||||||||  ||| ||||| ||||||||  ||||||||||||||||| ||||||| |||||||||| |    
T  27758947 taaattttaccacttaaggttgtattttaattttatttctctttatcaacaattatgaattgtactctttaaattataatacctaaccattagttacatt 27758848  T
Q  379 tatga 383  Q
    |||||    
T  27758847 tatga 27758843  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 279
Target Start/End: Complemental strand, 27759034 - 27758964
Alignment:
Q  210 gtttcttcacatatatcattc-acatcacatcctcatgcacaaatatcatataaaacataattaaaatcat 279  Q
    ||||||||| ||||||||||| |||||||||| |||| |||||||||||| |   ||||||||||||||||    
T  27759034 gtttcttcatatatatcattccacatcacatcttcatacacaaatatcatgttggacataattaaaatcat 27758964  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 275
Target Start/End: Original strand, 7337163 - 7337210
Alignment:
Q  228 ttcacatcacatcctcatgcacaaatatcatataaaacataattaaaa 275  Q
    |||||||||||||| ||| ||||| | |||||||||||||||||||||    
T  7337163 ttcacatcacatccacatacacaactttcatataaaacataattaaaa 7337210  T

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Target: scaffold0054 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 27 - 145
Target Start/End: Complemental strand, 31800 - 31681
Alignment:
Q  27 aaatgcatatgatatgaatgacatgaatcctatccaaccactaaggcaaacacaatcaactattaataatcatcatgcacatgaccc-aaaaccaatctt 125  Q
    ||||||| |||||||||||||||||||| | || |    ||| || || ||||| ||||||||||||||| ||||| ||||| |||| |||| |||||||    
T  31800 aaatgcacatgatatgaatgacatgaatgcaataccgttacttagacagacacagtcaactattaataatgatcatacacataacccaaaaatcaatctt 31701  T
Q  126 ttcataaaactcatttttcc 145  Q
    |||||||||||||| |||||    
T  31700 ttcataaaactcatatttcc 31681  T

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Target: scaffold0054; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 406
Target Start/End: Complemental strand, 31299 - 31216
Alignment:
Q  323 aacaacagttatgaatcatactctttaaattataacacctaacaattagttacaattatgataagaatggaaaagtgtccttac 406  Q
    ||||||| ||||||||||| ||||||||||||||| || |||| | |||||||| |||||||||| ||||  ||||| ||||||    
T  31299 aacaacaattatgaatcatgctctttaaattataatacgtaaccactagttacagttatgataagcatggggaagtgcccttac 31216  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 406
Target Start/End: Complemental strand, 21511147 - 21511077
Alignment:
Q  336 aatcatactctttaaattataacacctaacaattagttacaattatgataagaatggaaaagtgtccttac 406  Q
    ||||||||| |||||| ||||| | ||| | |||||||| | |||||||||  ||||||||||||||||||    
T  21511147 aatcatactttttaaactataatatctagccattagttagagttatgataactatggaaaagtgtccttac 21511077  T

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