View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2926_low_21 (Length: 417)
Name: NF2926_low_21
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2926_low_21 |
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| [»] scaffold0123 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 21 - 402
Target Start/End: Complemental strand, 4500210 - 4499829
Alignment:
| Q |
21 |
ttctcaagtgtcccacattgctttagccattttacaatatgaaagcgagtgacactcatatatgcctaaggccaatatgagtgtgttcctcgctttcaaa |
120 |
Q |
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| T |
4500210 |
ttctcaagtgtcccacattgctttagtcattttacaatatgaaagcgagtgacactcatatacgtctaaggccaatatgagtgtgttccttgctttcaaa |
4500111 |
T |
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| Q |
121 |
ttgtatcggaattatttttatcatcggctgttcaataggccttaggctcgttttgcatgacaccacaaatgtctatttgcggttcaaaccacccgttgac |
220 |
Q |
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| T |
4500110 |
ttgtatcggaattatttttatcatcggctgttcaatcggccttaggctcgttttgcatgacaccacaaacgtctatttgcggttcaaaccacccgttgac |
4500011 |
T |
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| Q |
221 |
gacgacaactcaaacatccatgtcaactgatcgtatatgcacgctcatgcattctttccaatataaactctactgtacactcgtttaggatccttgcttg |
320 |
Q |
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| T |
4500010 |
gacaacaactcaaacatccatgtcaaccgatcgtatatgcacgctcatgcattctttccaatataaactgtactgtacgccggtttaggatccttgcttg |
4499911 |
T |
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| Q |
321 |
taatataaactctttcgttaattaaaccgtgatcgaataaaccaagctcgtgatgctatttgttggccgatatgatgaatac |
402 |
Q |
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| T |
4499910 |
taatataaactctttcgttaattaaaccgtgaccgaataaaccaagctcgtgatgctatttgttggccgatatgatgaatac |
4499829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0123 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0123
Description:
Target: scaffold0123; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 165 - 283
Target Start/End: Complemental strand, 13410 - 13292
Alignment:
| Q |
165 |
ggctcgttttgcatgacaccacaaatgtctatttgcggttcaaaccacccgttgacgacgacaactcaaacatccatgtcaactgatcgtatatgcacgc |
264 |
Q |
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| T |
13410 |
ggcttgttttgtatgacaccattaacatctatttgcggttcaaatctcctatttatgacgacatctgaaacatacgtgtcaaccaattgaatatgcacgc |
13311 |
T |
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| Q |
265 |
tcatgcattctttccaata |
283 |
Q |
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| T |
13310 |
tcatgcattctttccaata |
13292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 283
Target Start/End: Original strand, 17794744 - 17794862
Alignment:
| Q |
165 |
ggctcgttttgcatgacaccacaaatgtctatttgcggttcaaaccacccgttgacgacgacaactcaaacatccatgtcaactgatcgtatatgcacgc |
264 |
Q |
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| T |
17794744 |
ggcttgttttgtatgacaccattaacatctatttgcggttcaaatctcctatttatgacgacatctgaaacatacgtgtcaaccaattgaatatgcacgc |
17794843 |
T |
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| Q |
265 |
tcatgcattctttccaata |
283 |
Q |
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| T |
17794844 |
tcatgcattcttttcaata |
17794862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 222
Target Start/End: Complemental strand, 17689442 - 17689316
Alignment:
| Q |
97 |
atgagtgtgttcctcgctttcaaattgtatcggaattattt-ttatcatcggctgttcaataggccttaggctcgttttgcatgacaccacaaatgtcta |
195 |
Q |
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| T |
17689442 |
atgagtatgttcatcgctttcaaatcgtattagactttcttcttatcatcagttgtccaatcgatcttaggcttgttttgcatgacaccgccaacatata |
17689343 |
T |
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| Q |
196 |
tttgcggttcaaaccacccgttgacga |
222 |
Q |
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| T |
17689342 |
tttgcggttcaaaccatccgttgacga |
17689316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 283
Target Start/End: Original strand, 14635880 - 14635966
Alignment:
| Q |
197 |
ttgcggttcaaaccacccgttgacgacgacaactcaaacatccatgtcaactgatcgtatatgcacgctcatgcattctttccaata |
283 |
Q |
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| T |
14635880 |
ttgcggttgaaaccacccgttggccacgacatcccacacatccatatctaccgattggatgtgaacgctcatccattctttccaata |
14635966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 283
Target Start/End: Original strand, 13606444 - 13606496
Alignment:
| Q |
231 |
caaacatccatgtcaactgatcgtatatgcacgctcatgcattctttccaata |
283 |
Q |
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| T |
13606444 |
caaacatccatgtccaccgattggatatgaacgctcatgcactctttccaata |
13606496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 284
Target Start/End: Original strand, 24374015 - 24374091
Alignment:
| Q |
207 |
aaccacccgttgacgacgacaactcaaacatccatgtcaactgatcgtatatgcacgctcatgcattctttccaatat |
284 |
Q |
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| T |
24374015 |
aaccgcccgttgaccacgacatcccaa-cattcatgtcaaccgattggatatgaacgctcatgcattcttaccaatat |
24374091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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