View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2926_low_23 (Length: 407)
Name: NF2926_low_23
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2926_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 12 - 394
Target Start/End: Complemental strand, 9409625 - 9409243
Alignment:
| Q |
12 |
agagagatgggaggttggttgaacgaaggagagtgtcaaaattcttcacggtggaaggacctattgggagttcgaagaggtatttgttcaagagtgccta |
111 |
Q |
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| T |
9409625 |
agagagatgggaggtcggttgaacgaaggagggtgtcaaaattcttcacggtggaaggacctattgggagttcgaagaggtattcattcaggagtgccta |
9409526 |
T |
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| Q |
112 |
attgttttggtgataacttgaggaagtcgatagaaaatggtggtgatacannnnnnnggacggatccatggttgagtggtattctttttagtgatagatt |
211 |
Q |
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| T |
9409525 |
attggtttgatgataacttgaggaagtcgatagaaaatggtggtgatacatttttttggacggatccatggttgagtggtattctttttagtgatagatt |
9409426 |
T |
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| Q |
212 |
tgataggttgtttgagttaaccgacaaccctttgatgtcagtcgccgatatgtttgggtttgggtggggtgaggggcagggacttggaagtgacgatgga |
311 |
Q |
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| T |
9409425 |
tgataggttgtttgagttaactgacaaccctttgatgtcagtggccgatatgtttgggtttgggtggggtgaggggcagggacttggaagtgacggtgga |
9409326 |
T |
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| Q |
312 |
agttgtttgcccggggagcgaatgttatgggagtgttatgttttgcttcttgatgttgttttgcaggttgacgtggtggatac |
394 |
Q |
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| T |
9409325 |
agttgtttgcgcggggagcaaatgttatgggattgttatgttttgcttcttgatgttgttttgcaggttgacgtggtggatac |
9409243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 49 - 394
Target Start/End: Complemental strand, 33218070 - 33217722
Alignment:
| Q |
49 |
aaaattcttcacggtggaaggacctattgggagttcgaagaggtatttgttcaagagtgcctaattgttttggtgataacttgaggaagtcgatagaaaa |
148 |
Q |
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| T |
33218070 |
aaaattcttcttggtggaaggatctaatgggagttcgaagatggattggttcatgggtggctaattggtttgatgataacttaaggaagtcaatatgaaa |
33217971 |
T |
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| Q |
149 |
tggtggtgataca--nnnnnnnggacggatccatggttgagtggtattctttttagtgatagatttgataggttgtttgagttaaccgacaaccctttga |
246 |
Q |
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| T |
33217970 |
tggtattgctacattctcttttggacgaatcattggttaggtggtattcctcttagtgttagatttcatacgttatttgagttaactgacaaccctttca |
33217871 |
T |
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| Q |
247 |
tgtcagtcgccgatatgtttgggtttgggtggggtgaggggcagggacttgga---agtgacgatggaagttgtttgcccgg--ggagcgaatgttatgg |
341 |
Q |
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| T |
33217870 |
tgtaagttgatgatatgtatgcggttggttggggtaagggagagaggcttggaaccagagacgat----gttgtttgcatgggaggagaaaatattatgg |
33217775 |
T |
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| Q |
342 |
gagtgttatgttttgcttcttgatgttgttttgcaggttgacgtggtggatac |
394 |
Q |
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| T |
33217774 |
tagtgttgtgatatccttcttgatgttgttttacaggttgatgtggtggatac |
33217722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 378
Target Start/End: Original strand, 20122724 - 20122762
Alignment:
| Q |
340 |
gggagtgttatgttttgcttcttgatgttgttttgcagg |
378 |
Q |
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| T |
20122724 |
gggagtgttctgttttgcttcttaatgttgttttgcagg |
20122762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 334 - 395
Target Start/End: Original strand, 26385685 - 26385746
Alignment:
| Q |
334 |
tgttatgggagtgttatgttttgcttcttgatgttgttttgcaggttgacgtggtggatact |
395 |
Q |
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| T |
26385685 |
tgttaggggagtgttgtgctttgtttcttgatgttgttttgtaggttgatgtggtggatact |
26385746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 26385506 - 26385565
Alignment:
| Q |
173 |
ggatccatggttgagtggtattctttttagtgatagatttgataggttgtttgagttaac |
232 |
Q |
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|||||| |||||||||| ||||| |||||||| |||||||| |||||| ||||||||||| |
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| T |
26385506 |
ggatccgtggttgagtgatattccttttagtgttagatttggtaggttatttgagttaac |
26385565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 394
Target Start/End: Complemental strand, 15186287 - 15186235
Alignment:
| Q |
342 |
gagtgttatgttttgcttcttgatgttgttttgcaggttgacgtggtggatac |
394 |
Q |
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| T |
15186287 |
gagtgttgtgttttacttcttgatgttgttttgcagcatgatgtggtggatac |
15186235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 378
Target Start/End: Complemental strand, 22158337 - 22158299
Alignment:
| Q |
340 |
gggagtgttatgttttgcttcttgatgttgttttgcagg |
378 |
Q |
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|||||||||||||| |||||||| ||||||||||||||| |
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| T |
22158337 |
gggagtgttatgttatgcttcttaatgttgttttgcagg |
22158299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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