View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2926_low_25 (Length: 395)
Name: NF2926_low_25
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2926_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 7e-96; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 34029708 - 34029531
Alignment:
| Q |
1 |
atattagatcatacactcaggctaagaaattgtcatctgcttcttctgctgctgtttccaacaaggtgaaaagaaccaaggaagaatctatgaagaaagt |
100 |
Q |
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| T |
34029708 |
atattagatcatacactcaggctaagaaattgtcatctgcttcttctgctgctgtttccaacaaggtgaaaagaaccaaggaagaatctatgaagaaagt |
34029609 |
T |
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| Q |
101 |
catggacttgaattgttggggtcctagtactgcaaggttttaatattgtggactttgaattgatgctaatttatgatg |
178 |
Q |
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| T |
34029608 |
catggacttgaattgttggggtcctagtactgcaaggttttaatattgtggactttgaattgatgctaatttatgatg |
34029531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 249 - 380
Target Start/End: Complemental strand, 34027422 - 34027290
Alignment:
| Q |
249 |
ggttccttcattgttaatggttttctctctaatttgttagatatatctaacggttttaatgagactggtataaacaaacgtatatttgttgtgaaaggaa |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34027422 |
ggttccttcattgttaatggttttctctctaatttgttagatatatctaacggttttaatgagactggtataaataaacgtatatttgttgtgaaaggaa |
34027323 |
T |
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| Q |
349 |
a-taattattttgatcaaaattctgtaactact |
380 |
Q |
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| T |
34027322 |
agtaattattttgatcaaaattctgtaactact |
34027290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 34026780 - 34026625
Alignment:
| Q |
1 |
atattagatcatacactcaggctaagaaattgtcatctgcttcttctgctgctgtttccaacaaggtgaaaagaaccaaggaagaatctatgaagaaagt |
100 |
Q |
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|||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||| |
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| T |
34026780 |
atatcagatcatacactaaggccaagaaattgtcatctgcttcttctgctgctgtttccaacaaggtgaagagaagcaaggaagaatctatgaggaaagt |
34026681 |
T |
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| Q |
101 |
catggacttgaattgttggggtcctagtactgcaaggttttaatattgtggacttt |
156 |
Q |
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||| |||||||||||| |||||||||||||| |||||||||||||||||| ||||| |
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| T |
34026680 |
cattgacttgaattgtcggggtcctagtacttcaaggttttaatattgtgcacttt |
34026625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 34031643 - 34031470
Alignment:
| Q |
1 |
atattagatcatacactcaggctaagaaattgtcatctgcttcttctgctgctgtttccaacaaggtgaaaagaaccaaggaagaatctatgaagaaagt |
100 |
Q |
| |
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|||||||||||||| |||| || ||||||||||| |||||||| |||||||||||||| || |||||||| |||| ||||||||||||||||| |||||| |
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| T |
34031643 |
atattagatcatactctcaagccaagaaattgtcctctgcttcatctgctgctgtttcgaataaggtgaagagaagcaaggaagaatctatgaggaaagt |
34031544 |
T |
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| Q |
101 |
catggacttgaattgttggggtcctagtactgcaaggttttaatattgtggactttgaattgatgctaatttat |
174 |
Q |
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||| ||||||||||| ||||||||||||||||||||||||||||||||||||| || |||| ||||| |||||| |
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| T |
34031543 |
cattgacttgaattgctggggtcctagtactgcaaggttttaatattgtggacatttaattaatgctgatttat |
34031470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 34034743 - 34034675
Alignment:
| Q |
56 |
ttccaacaaggtgaaaagaaccaaggaagaatctatgaagaaagtcatggacttgaattgttggggtcc |
124 |
Q |
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||||||||||| ||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34034743 |
ttccaacaaggggaagagaaacaaggaagaatctatgaagaaagtcatggacctgaattgttggggtcc |
34034675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 126
Target Start/End: Original strand, 38019382 - 38019427
Alignment:
| Q |
81 |
gaagaatctatgaagaaagtcatggacttgaattgttggggtccta |
126 |
Q |
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||||||||| ||| |||||||||| |||||| |||||||||||||| |
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| T |
38019382 |
gaagaatctttgaggaaagtcatgtacttgagttgttggggtccta |
38019427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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