View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2926_low_27 (Length: 372)

Name: NF2926_low_27
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2926_low_27
NF2926_low_27
[»] chr2 (6 HSPs)
chr2 (1-368)||(42205549-42205924)
chr2 (64-205)||(42212802-42212943)
chr2 (271-339)||(18570971-18571040)
chr2 (302-352)||(12464872-12464922)
chr2 (282-339)||(14268735-14268793)
chr2 (307-337)||(18029593-18029623)
[»] chr8 (4 HSPs)
chr8 (305-368)||(14227192-14227255)
chr8 (305-356)||(37225769-37225820)
chr8 (302-352)||(10170409-10170459)
chr8 (305-337)||(40063952-40063984)
[»] chr5 (3 HSPs)
chr5 (280-368)||(28296298-28296387)
chr5 (302-365)||(9878055-9878118)
chr5 (275-337)||(9055569-9055631)
[»] chr7 (1 HSPs)
chr7 (279-337)||(2525843-2525902)
[»] chr1 (4 HSPs)
chr1 (305-364)||(10475003-10475062)
chr1 (271-337)||(19637769-19637836)
chr1 (314-368)||(17831566-17831620)
chr1 (315-367)||(3490426-3490478)
[»] chr4 (2 HSPs)
chr4 (302-352)||(2796532-2796582)
chr4 (305-337)||(19195188-19195220)
[»] chr3 (4 HSPs)
chr3 (282-347)||(18268007-18268073)
chr3 (305-367)||(52067067-52067129)
chr3 (271-327)||(23271985-23272042)
chr3 (305-337)||(33548843-33548875)
[»] chr6 (1 HSPs)
chr6 (267-366)||(7377951-7378051)


Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 42205549 - 42205924
Alignment:
Q  1 tcagaaatatgtgtaaataaatagataataaaaccttaattaggtgaatttgtaacacgatgatatccatttcacactgaattcatgtgtaatttgcttg 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42205549 tcagaaatatgtgtgaataaatagataataaaaccttaattaggtgaatttgtaacacgatgatatccatttcacactgaattcatgtgtaatttgcttg 42205648  T
Q  101 tttgatgaacatttcacagatttatttgcacttttgattgattattttttctagttgtgatatgatatcttaatccaacctatcctatacttcacagtta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42205649 tttgatgaacatttcacagatttatttgcacttttgattgattattttttctagttgtgatatgatatcttaatccaacctatcctatacttcacagtta 42205748  T
Q  201 gttccctgnnnnnnnaattattattctatatgaagcacctttactccttggattaggcgtgttcggtg-------catatcgtgtccgacaccgacacat 293  Q
    ||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||| |||||||||||    
T  42205749 gttccctgcttttttaattattattctatatgaagcacctttactccttggattaggcgtgttcggtgtcagatacatatcgtgtccggcaccgacacat 42205848  T
Q  294 atga-tattttcaattaagtcattttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgtctgtg 368  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42205849 atgattattttcaattaagtcattttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgtctgtg 42205924  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 64 - 205
Target Start/End: Original strand, 42212802 - 42212943
Alignment:
Q  64 tatccatttcacactg-aattcatgtgtaatttgcttgtttgatgaacatttcacagatttatttgcactttt-gattgattattttttctagttgtgat 161  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||   |   | |    
T  42212802 tatccatttcacactgcaattcatgtgtaatttgcttgtttgatgaacatttcacagatttatttgcacttttagattgattaatttttcccct--agct 42212899  T
Q  162 atgatatcttaatccaacctatcctatacttcacagttagttcc 205  Q
     || |||||||||||||| |||||||||||| |||||| |||||    
T  42212900 gtgctatcttaatccaacttatcctatactttacagtttgttcc 42212943  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 339
Target Start/End: Complemental strand, 18571040 - 18570971
Alignment:
Q  271 tatcgtgtccgacaccgacacatatgat-attttcaattaagtcattttctcaaattattattggtgttg 339  Q
    |||||||| |||||| |||||||||||| |  || ||||| ||||||||||||||||||||| |||||||    
T  18571040 tatcgtgttcgacactgacacatatgattacattgaattatgtcattttctcaaattattatcggtgttg 18570971  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 12464872 - 12464922
Alignment:
Q  302 ttcaattaagtcattttctcaaattattattggtgttggcatgtcaatgtc 352  Q
    |||||| | ||||||||||||||||||||||||||| ||| ||||| ||||    
T  12464872 ttcaatcatgtcattttctcaaattattattggtgtcggcgtgtcagtgtc 12464922  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 339
Target Start/End: Original strand, 14268735 - 14268793
Alignment:
Q  282 acaccgacacatatgat-attttcaattaagtcattttctcaaattattattggtgttg 339  Q
    |||||||||||||| || |  |||||||||||||||||||||||||||||  |||||||    
T  14268735 acaccgacacatatcattacgttcaattaagtcattttctcaaattattaccggtgttg 14268793  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 337
Target Start/End: Original strand, 18029593 - 18029623
Alignment:
Q  307 ttaagtcattttctcaaattattattggtgt 337  Q
    |||||||||||||||||||||||||||||||    
T  18029593 ttaagtcattttctcaaattattattggtgt 18029623  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 305 - 368
Target Start/End: Complemental strand, 14227255 - 14227192
Alignment:
Q  305 aattaagtcattttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgtctgtg 368  Q
    ||||| || |||||||||||||||||||||||||| | ||||| || ||||||| |||||||||    
T  14227255 aattatgttattttctcaaattattattggtgttgacgtgtcagtgacgtgtccagtgtctgtg 14227192  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 305 - 356
Target Start/End: Original strand, 37225769 - 37225820
Alignment:
Q  305 aattaagtcattttctcaaattattattggtgttggcatgtcaatgtcgtgt 356  Q
    ||||| || |||||||||||||||||||||||| | |||||| |||||||||    
T  37225769 aattatgttattttctcaaattattattggtgtagacatgtctatgtcgtgt 37225820  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 10170409 - 10170459
Alignment:
Q  302 ttcaattaagtcattttctcaaattattattggtgttggcatgtcaatgtc 352  Q
    ||||||||| | |||||||||||||||||||||||||| | || |||||||    
T  10170409 ttcaattaatttattttctcaaattattattggtgttgacgtgccaatgtc 10170459  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 40063984 - 40063952
Alignment:
Q  305 aattaagtcattttctcaaattattattggtgt 337  Q
    ||||| |||||||||||||||||||||||||||    
T  40063984 aattatgtcattttctcaaattattattggtgt 40063952  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 368
Target Start/End: Complemental strand, 28296387 - 28296298
Alignment:
Q  280 cgacaccgacacatatga-tattttcaattaagtcattttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgtctgtg 368  Q
    ||||||| |||||||||| ||  || ||||| ||||||||||||||||||||| ||||| | | |||| ||||||||||  |||||||||    
T  28296387 cgacaccaacacatatgagtacattgaattatgtcattttctcaaattattatcggtgtcgacttgtccatgtcgtgtcttgtgtctgtg 28296298  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 365
Target Start/End: Original strand, 9878055 - 9878118
Alignment:
Q  302 ttcaattaagtcattttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgtct 365  Q
    ||||||||| |||| ||||||||||||||||||||| | | ||||| |||| ||| ||||||||    
T  9878055 ttcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgtcttgttcggtgtct 9878118  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 337
Target Start/End: Complemental strand, 9055631 - 9055569
Alignment:
Q  275 gtgtccgacaccgacacatatgatattttcaattaagtcattttctcaaattattattggtgt 337  Q
    |||| ||||||||||||||||||||  ||| |||| | |||||| |||||||| |||||||||    
T  9055631 gtgttcgacaccgacacatatgatacattctattatgccattttttcaaattactattggtgt 9055569  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 337
Target Start/End: Original strand, 2525843 - 2525902
Alignment:
Q  279 ccgacaccgacacatatgat-attttcaattaagtcattttctcaaattattattggtgt 337  Q
    |||||||||||||||||||| || || ||||| ||||||| ||||||||||||| |||||    
T  2525843 ccgacaccgacacatatgattatattgaattatgtcatttgctcaaattattatcggtgt 2525902  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 305 - 364
Target Start/End: Original strand, 10475003 - 10475062
Alignment:
Q  305 aattaagtcattttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgtc 364  Q
    ||||| || |||||||||| ||||||  ||||| ||| ||||||||||||||||||||||    
T  10475003 aattatgtgattttctcaagttattagcggtgtcggcgtgtcaatgtcgtgtccggtgtc 10475062  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 337
Target Start/End: Complemental strand, 19637836 - 19637769
Alignment:
Q  271 tatcgtgtccgacaccgacacatatga-tattttcaattaagtcattttctcaaattattattggtgt 337  Q
    ||||||||||||||||||||||||||| ||  || ||| | |||||||||| |||||||||| |||||    
T  19637836 tatcgtgtccgacaccgacacatatgattacattgaataatgtcattttcttaaattattatcggtgt 19637769  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 368
Target Start/End: Original strand, 17831566 - 17831620
Alignment:
Q  314 attttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgtctgtg 368  Q
    |||||||||||||||||  ||||| ||| ||||| |||||| |||||||||||||    
T  17831566 attttctcaaattattagcggtgtcggcgtgtcagtgtcgtatccggtgtctgtg 17831620  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 367
Target Start/End: Original strand, 3490426 - 3490478
Alignment:
Q  315 ttttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgtctgt 367  Q
    ||||||||||||||||   |||| ||| ||||| |||||||||||||||||||    
T  3490426 ttttctcaaattattagcagtgtcggcgtgtcagtgtcgtgtccggtgtctgt 3490478  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 2796582 - 2796532
Alignment:
Q  302 ttcaattaagtcattttctcaaattattattggtgttggcatgtcaatgtc 352  Q
    ||||||||| ||||||||||||||||||| ||||||||   ||||||||||    
T  2796582 ttcaattaattcattttctcaaattattaatggtgttgaagtgtcaatgtc 2796532  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 19195188 - 19195220
Alignment:
Q  305 aattaagtcattttctcaaattattattggtgt 337  Q
    ||||| |||||||||||||||||||||||||||    
T  19195188 aattacgtcattttctcaaattattattggtgt 19195220  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 347
Target Start/End: Original strand, 18268007 - 18268073
Alignment:
Q  282 acaccgacacatatgat-attttcaattaagtcattttctcaaattattattggtgttggcatgtca 347  Q
    |||||||||||| |||| |  ||||||||| ||||||||||||||||||||  |||||| |||||||    
T  18268007 acaccgacacatgtgattacgttcaattaattcattttctcaaattattatcagtgttgacatgtca 18268073  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 367
Target Start/End: Complemental strand, 52067129 - 52067067
Alignment:
Q  305 aattaagtcattttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgtctgt 367  Q
    |||||| ||||||||| |||||||||||||| | | | ||||| ||| |||||||||||||||    
T  52067129 aattaattcattttcttaaattattattggtatcgacgtgtcagtgttgtgtccggtgtctgt 52067067  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 327
Target Start/End: Original strand, 23271985 - 23272042
Alignment:
Q  271 tatcgtgtccgacaccgacacatatga-tattttcaattaagtcattttctcaaatta 327  Q
    |||||||||| |||||||||||||||| ||  |||||||| |||| ||||||||||||    
T  23271985 tatcgtgtccaacaccgacacatatgattacattcaattatgtcagtttctcaaatta 23272042  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 33548875 - 33548843
Alignment:
Q  305 aattaagtcattttctcaaattattattggtgt 337  Q
    ||||||||||||||||||||||||||| |||||    
T  33548875 aattaagtcattttctcaaattattatcggtgt 33548843  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 366
Target Start/End: Complemental strand, 7378051 - 7377951
Alignment:
Q  267 tgcatatcgtgtccgacaccgacacatatga-tattttcaattaagtcattttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgtct 365  Q
    ||||| ||||||||||||||||||||||| | ||  || ||||| || ||||||||||||| |||  ||||| ||  ||||  ||| |||||||||||||    
T  7378051 tgcatgtcgtgtccgacaccgacacatataattacattgaattatgtgattttctcaaatttttagcggtgtcggggtgtctgtgttgtgtccggtgtct 7377952  T
Q  366 g 366  Q
    |    
T  7377951 g 7377951  T

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