View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2926_low_29 (Length: 364)
Name: NF2926_low_29
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2926_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 4 - 347
Target Start/End: Complemental strand, 35613299 - 35612955
Alignment:
| Q |
4 |
tagcaaactcacacaaagagagagtttccttagctttcttctacaatccaaaaagtgacattccaatagagccagctaaggaattggtaaagccagataa |
103 |
Q |
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| T |
35613299 |
tagcaaactcacacaaagagagagtttccttagccttcttctacaatcccaaaagtgacattccaatagagccagcaaaagaattggtaaagccagataa |
35613200 |
T |
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| Q |
104 |
acctgccctctatcctgctatgacctttgatgaatataggcttttcattagaatgaggggtccatgtggaaaatctcaagtagaatctttaaaatctcca |
203 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35613199 |
acctgccctctaccctgctatgacctttgatgaatataggcttttcattagaatgaggggtccatgtggaaaatctcaagttgaatctttaaaatctcca |
35613100 |
T |
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| Q |
204 |
agatgatatgcatgtttggatcagtggtaagtctacaaaagcacgataacatctacattgttggtttatgtgtcaatgaggcaagagacgcgtgtttttt |
303 |
Q |
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|||||||| ||||||||||||||| |||||||||| |||| |||||| ||||||||| |||| |||| ||||||| ||| |||||||||| ||||||||| |
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| T |
35613099 |
agatgatacgcatgtttggatcagcggtaagtctataaaatcacgatgacatctacactgtttgtttttgtgtcagtgaagcaagagacgtgtgtttttt |
35613000 |
T |
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| Q |
304 |
-agaagctactattaaaatttcaaaagataatttttgctgaaatc |
347 |
Q |
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|||||||||||||||| |||| ||||||| ||||| |||||||| |
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| T |
35612999 |
cagaagctactattaaagtttcgaaagatagtttttactgaaatc |
35612955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 191
Target Start/End: Complemental strand, 31789833 - 31789746
Alignment:
| Q |
104 |
acctgccctctatcctgctatgacctttgatgaatataggcttttcattagaatgaggggtccatgtggaaaatctcaagtagaatct |
191 |
Q |
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|||||| ||||| || || |||||||||||||| || || || ||||||||||||||||| || ||||| ||||||||||| |||||| |
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| T |
31789833 |
acctgcactctacccagcaatgacctttgatgagtacagactcttcattagaatgaggggaccttgtggcaaatctcaagttgaatct |
31789746 |
T |
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