View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2926_low_30 (Length: 363)
Name: NF2926_low_30
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2926_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 8 - 357
Target Start/End: Complemental strand, 17232309 - 17231960
Alignment:
| Q |
8 |
cgaagaatatgtaacatgaacattcaatcaggaggatataaaaaatgaattgattaataaaaaattacgatagcttactgttcccatgtctgttctatga |
107 |
Q |
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| T |
17232309 |
cgaaaaatatgtaacatgaacattcaatcaggaggatataaaaaatgaattgattaataaaaaattacgatagcttactgttcccatgtctgttctatga |
17232210 |
T |
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| Q |
108 |
gtaaggtacgtattgtacttccttcgagataatccgaaatcacgtacctattcaaaagtataaaaagtcataccacatacacgaacacgtcaaatagtat |
207 |
Q |
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| T |
17232209 |
gtaaggtacgtattgtacttccttcgagataatccgaaatcacgtacctattcaaaagtataaaaagtcataccacatacatgaacacgtcaaatagtat |
17232110 |
T |
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| Q |
208 |
aaccaccatgtgctatcaaggaacattaatgaatcataaagattaaattcaatgagcacctttagattaaaacctttgtcaacaaggaggttttcggacg |
307 |
Q |
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| T |
17232109 |
aaccaccatgtgctatcaaggaacattaatgaatcataaagattaaattcaatgagcacctttagataaaaacttttgtcaaccaggaggtttttggacg |
17232010 |
T |
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| Q |
308 |
tcaaaatccctatgaaaaatcataggagtttctagttatgatcttaattc |
357 |
Q |
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| T |
17232009 |
tcaaaatccctatgaactatcataggagtttctaattatgatcttaattc |
17231960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 156 - 324
Target Start/End: Complemental strand, 1251061 - 1250903
Alignment:
| Q |
156 |
tattcaaaagtataaaaagtcataccacatacacgaacacgtcaaatagtataaccaccatgtgctatcaaggaacattaatgaatcataaagattaaat |
255 |
Q |
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| T |
1251061 |
tattcataagtaaaaaaagtcataccacatacatgaacaattcaaatagtataaccaccatgt--------ggaacattaattaatcataaagattaaat |
1250970 |
T |
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| Q |
256 |
tcaatgagcacctttagattaaaacctttgtcaacaaggaggttttcggacgtcaaaatccctatgaaa |
324 |
Q |
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| T |
1250969 |
tcaatgagcaattttacattaacgtttctatcaacaaggaggtttttggacgtc--aatccctatgaaa |
1250903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 117 - 271
Target Start/End: Original strand, 38946403 - 38946556
Alignment:
| Q |
117 |
gtattgtacttccttcgagataatccgaaatcacgtacctattcaaaagtataaaaagtcataccacatacacgaacacgtcaaatagtataaccaccat |
216 |
Q |
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| T |
38946403 |
gtattatacttcatttgagataagttgaaatcgcatacctattcaaaagtaaaaaaagtcataccatatacatgaacagttcaaatagtataatcatcat |
38946502 |
T |
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| Q |
217 |
gtgctatcaaggaacattaatgaatcataaagattaaattcaatgagcaccttta |
271 |
Q |
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| T |
38946503 |
gaactatcgcagagcaataattaatca-caagattaaattcaatgaacaccttta |
38946556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 38947892 - 38947955
Alignment:
| Q |
179 |
accacatacacgaacacgtcaaatagtataaccaccatgtgctatcaaggaacattaatgaatc |
242 |
Q |
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| T |
38947892 |
accacatacatgaacttgtcaaatagtataatcaccatgtgctatcaaggaacattaattaatc |
38947955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 38946301 - 38946343
Alignment:
| Q |
20 |
aacatgaacattcaatcaggaggatataaaaaatgaattgatt |
62 |
Q |
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| T |
38946301 |
aacatgaacattcaataaggatgatataaagaatgaattgatt |
38946343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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