View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2926_low_32 (Length: 355)
Name: NF2926_low_32
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2926_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 76 - 339
Target Start/End: Original strand, 54392179 - 54392443
Alignment:
| Q |
76 |
attcatgagtagaagaagtccgatataatggagcgaatgcatggtaagatctataaacttgtgtaatttaatggtcaaaaatcttgatccaatatggacc |
175 |
Q |
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| T |
54392179 |
attcatgagtagaagaagtccgatataatggagtgaatacatggtaagatctataagcttgtgtaatttaatggtcagaaatcttgatccaatatggacc |
54392278 |
T |
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| Q |
176 |
aatacatgtatgggtccatcctaaacgccacccataaatcgtgctttccaccattcaagatttacctatccttactcaataagacaaggatgttgttaag |
275 |
Q |
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| T |
54392279 |
aatacatgtatgggtccatcctaaacgccacccataagtcgtgctttccaccattcaagatttacctatccttactcaataagacaaagatgttgttaag |
54392378 |
T |
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| Q |
276 |
gaattgctgaaaatacacatggaggcacaaa-tcataatttgtaaacttcataagttgtgctacc |
339 |
Q |
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| T |
54392379 |
gaattgttgaaaatacacatggaggcacaaattcataatttgtaaacttcataagtcgtgctacc |
54392443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 52694751 - 52694809
Alignment:
| Q |
144 |
taatggtcaaaaatcttgatccaatatggaccaatacatgtatgggtccatcctaaacg |
202 |
Q |
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| T |
52694751 |
taatggtcagaaatcttgatccagtatggaccaatacatctatgagtccatgctaaacg |
52694809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 97 - 200
Target Start/End: Complemental strand, 25376401 - 25376298
Alignment:
| Q |
97 |
gatataatggagcgaatgcatggtaagatctataaacttgtgtaatttaatggtcaaaaatcttgatccaatatggaccaatacatgtatgggtccatcc |
196 |
Q |
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| T |
25376401 |
gatatagtgcagtgaatgcatgatagaatctataagcttgtttaatctaatggatagaaatgttggtccagtatggaccaatacatctatgagtccatgc |
25376302 |
T |
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| Q |
197 |
taaa |
200 |
Q |
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|||| |
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| T |
25376301 |
taaa |
25376298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 22629265 - 22629201
Alignment:
| Q |
143 |
ttaatggtcaaaaatcttgatccaatatggaccaatacatgtatgggtccatcctaaacgccacc |
207 |
Q |
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| T |
22629265 |
ttaatggtcaaaaatcttgatccagtatggaccaatacatctatgagtccatgctaaacggcacc |
22629201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 202
Target Start/End: Original strand, 22453572 - 22453664
Alignment:
| Q |
110 |
gaatgcatggtaagatctataaacttgtgtaatttaatggtcaaaaatcttgatccaatatggaccaatacatgtatgggtccatcctaaacg |
202 |
Q |
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|||||||| || ||||||||||||||| |||| ||||||||| |||||||| |||||| ||||||||||||| |||||| ||| ||||||| |
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| T |
22453572 |
gaatgcattataggatctataaacttgtataatctaatggtcataaatcttggtccaatctggaccaatacatccatgggtgcatgctaaacg |
22453664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 43038775 - 43038712
Alignment:
| Q |
144 |
taatggtcaaaaatcttgatccaatatggaccaatacatgtatgggtccatcctaaacgccacc |
207 |
Q |
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||||||||| ||||||||||||| ||||||||||||||| |||| |||||| ||||||| |||| |
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| T |
43038775 |
taatggtcagaaatcttgatccagtatggaccaatacatctatgagtccatgctaaacgacacc |
43038712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 207
Target Start/End: Complemental strand, 51194731 - 51194647
Alignment:
| Q |
123 |
gatctataaacttgtgtaatttaatggtcaaaaatcttgatccaatatggaccaatacatgtatgggtccatcctaaacgccacc |
207 |
Q |
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|||||||||| |||| || ||||||| | |||||||| |||| ||||||||||||||| ||| |||||| ||||||| |||| |
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| T |
51194731 |
gatctataaatttgttcaagctaatggtaagaaatcttggtccagtatggaccaatacatccatgagtccatgctaaacggcacc |
51194647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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