View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2926_low_35 (Length: 350)
Name: NF2926_low_35
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2926_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 9283815 - 9283480
Alignment:
| Q |
1 |
ctttggaagataagagttgaaagggctatctaatgagagacatgaattgaatgaaccactcannnnnnnaggcacaacatcatatgaatgataaaccatc |
100 |
Q |
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| T |
9283815 |
ctttggaagataagagttgaaagggctatttaatgagagacatgaattgaatgaaccactcatttttttaggcacaacatcatatgaatgataaaccatc |
9283716 |
T |
|
| Q |
101 |
atcatatgagagacatgaatgaaccgctgctttgggatatgagagttgaaaatgatagttgcagacttgcaacaactatttattttgcgttaagtggtta |
200 |
Q |
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| T |
9283715 |
atcatatgagagacatgaatgaaccactgctttgggatatgagagttgaaaatgatagttgcagacttgcaacaactatttattttgcgttaagtggtta |
9283616 |
T |
|
| Q |
201 |
tgacacaacagcttacatttacaatattagcagtaaggatgataattagaatctagactttctgtcatatattgttgcagcaactatttatttagcttta |
300 |
Q |
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| T |
9283615 |
tgacacaacagcttacatttacaatattagcagtaaggatgataattagaatctagactttctgtcatatattgttgcagcaactatttatttagcttta |
9283516 |
T |
|
| Q |
301 |
ttttattgttgttgaaacagtcattatgaattactt |
336 |
Q |
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| T |
9283515 |
ttttattgttgttgaaacagtcattatgaattactt |
9283480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 182
Target Start/End: Original strand, 35051298 - 35051407
Alignment:
| Q |
70 |
aggcacaacatcatatgaatgataaaccatcatcatatgagagacatgaatgaaccgctgctttgggatatgagagttgaaaatgatagttgcagacttg |
169 |
Q |
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| T |
35051298 |
aggcacaacaccatatgattgataaaccatcagaat--gag-gacatgaatgaaccacttctttgggagatgagagttgaagatgattgttgcagacttg |
35051394 |
T |
|
| Q |
170 |
caacaactattta |
182 |
Q |
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| T |
35051395 |
cagaaactattta |
35051407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 70 - 182
Target Start/End: Complemental strand, 53324324 - 53324215
Alignment:
| Q |
70 |
aggcacaacatcatatgaatgataaaccatcatcatatgagagacatgaatgaaccgctgctttgggatatgagagttgaaaatgatagttgcagacttg |
169 |
Q |
| |
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|||||||||| ||||||| |||||||||||||| || ||| |||||||||||||| || |||||| | | |||||||||| ||||| ||||||||||| |
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| T |
53324324 |
aggcacaacaccatatgattgataaaccatcataat--gag-gacatgaatgaaccacttctttggaagacgagagttgaagatgattgttgcagacttt |
53324228 |
T |
|
| Q |
170 |
caacaactattta |
182 |
Q |
| |
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|| ||||||||| |
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| T |
53324227 |
cagaaactattta |
53324215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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