View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2926_low_41 (Length: 323)
Name: NF2926_low_41
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2926_low_41 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 11 - 309
Target Start/End: Original strand, 718719 - 719027
Alignment:
| Q |
11 |
aatgagatgtccatatttcgaactctacatcactatatattacaatgtattgtctctaccaacttaatatttgtttgaagtataaaattggtaagaacca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
718719 |
aatgagatgtccatatttcgaactctacatcactacatattataatgtattgtctctaccaacttaatatttgtttgaagtataaaattggtaagaacca |
718818 |
T |
|
| Q |
111 |
caaagtgaaatatatcatgtaggtttgaaattttccttattcatacgac----------tcctacggcataacatatatttgtttgtttgaggtagaata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
718819 |
caaagtgaaatatatcatgtaggtttgaaattttccttattcatacgacagatttagtttcctacggcataacatatatctgtttgtttgaggtagaata |
718918 |
T |
|
| Q |
201 |
agtagtcatttcataaaatatatctttgattaagttccaaaaaagtttacttaataaaaattacttgaattagtcttgagcagttgaacatagttaatat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
718919 |
agtagtcatttcataaaatatatctttgattaagttccaaaaaagtttacttattaaaaattacttgaattagtcttgagcagttgaacatagttaatat |
719018 |
T |
|
| Q |
301 |
tttcttatt |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
719019 |
tttcttatt |
719027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University