View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2926_low_43 (Length: 309)

Name: NF2926_low_43
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2926_low_43
NF2926_low_43
[»] scaffold0257 (1 HSPs)
scaffold0257 (127-292)||(16934-17099)
[»] chr3 (11 HSPs)
chr3 (156-292)||(28482343-28482476)
chr3 (156-292)||(28511155-28511288)
chr3 (166-281)||(28183391-28183506)
chr3 (178-292)||(28147198-28147313)
chr3 (194-266)||(17746703-17746774)
chr3 (194-266)||(19048023-19048094)
chr3 (215-292)||(28081414-28081493)
chr3 (215-262)||(27918045-27918092)
chr3 (221-292)||(27974226-27974297)
chr3 (183-231)||(28053163-28053211)
chr3 (183-231)||(28063588-28063636)
[»] chr2 (1 HSPs)
chr2 (214-266)||(8019573-8019625)


Alignment Details
Target: scaffold0257 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 127 - 292
Target Start/End: Original strand, 16934 - 17099
Alignment:
Q  127 gtgggaagtgtttttataatgtaatattgttacagtagtatataaaatatctccatagctttttatcatctctattgtaattacagcactttgttattct 226  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16934 gtgggaagtttttttataatgtaatattgttacagtagtatataaaatatctccatagctttttatcatctctattgtaattacagcactttgttattct 17033  T
Q  227 tattttatacatgtgtttatttcccattcatttattgcagcaatctagtgggaatatggataattt 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17034 tattttatacatgtgtttatttcccattcatttattgcagcaatctagtgggaatatggataattt 17099  T

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Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 156 - 292
Target Start/End: Complemental strand, 28482476 - 28482343
Alignment:
Q  156 ttacagtagtatataaaatatctccatag-ctttttatcatctctattgtaattacagcactttgttattcttattttatacatgtgtttatttcccatt 254  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||| ||| || ||    || ||||||||||||||||||||||||||||||||    
T  28482476 ttacagtagtatataaaatatctccatagtttttttatcatctctattgtacttataggac----ttgttcttattttatacatgtgtttatttcccatt 28482381  T
Q  255 catttattgcagcaatctagtgggaatatggataattt 292  Q
    ||||||||| || |||| ||||||||||||||||||||    
T  28482380 catttattgtaggaatcaagtgggaatatggataattt 28482343  T

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Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 156 - 292
Target Start/End: Complemental strand, 28511288 - 28511155
Alignment:
Q  156 ttacagtagtatataaaatatctccatag-ctttttatcatctctattgtaattacagcactttgttattcttattttatacatgtgtttatttcccatt 254  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||| ||| || ||    || ||||||||||||||||||||||||||||||||    
T  28511288 ttacagtagtatataaaatatctccatagtttttttatcatctctattgtacttataggac----ttgttcttattttatacatgtgtttatttcccatt 28511193  T
Q  255 catttattgcagcaatctagtgggaatatggataattt 292  Q
    ||||||||| || |||| ||||||||||||||||||||    
T  28511192 catttattgtaggaatcaagtgggaatatggataattt 28511155  T

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Target: chr3; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 166 - 281
Target Start/End: Original strand, 28183391 - 28183506
Alignment:
Q  166 atataaaatatctccatagctttttatcatctctattgtaattacagcactttgttattcttattttatacatgtgtttatttcccattcatttattgca 265  Q
    |||| ||||||||||| ||| | ||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28183391 atatcaaatatctccacagcctattatcatctctattgtacttacagaactttgttattcttattttatgcatgtgtttatttcccattcatttattgca 28183490  T
Q  266 gcaatctagtgggaat 281  Q
    | |||  |||||||||    
T  28183491 ggaattgagtgggaat 28183506  T

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Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 178 - 292
Target Start/End: Original strand, 28147198 - 28147313
Alignment:
Q  178 tccatagctttttatcatctctattgtaattacagcactttgttattcttattttatacat-gtgtttatttcccattcatttattgcagcaatctagtg 276  Q
    |||| ||| ||||||||||||||||||| ||| |  ||||||||||||||||||||| ||| |||||||||||||||||||||||| ||| |||  ||||    
T  28147198 tccagagccttttatcatctctattgtacttatatgactttgttattcttattttatgcattgtgtttatttcccattcatttattacaggaattgagtg 28147297  T
Q  277 ggaatatggataattt 292  Q
    ||||| ||||||||||    
T  28147298 ggaatgtggataattt 28147313  T

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Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 194 - 266
Target Start/End: Complemental strand, 17746774 - 17746703
Alignment:
Q  194 atctctattgtaattacagcactttgttattcttattttatacatgtgtttatttcccattcatttattgcag 266  Q
    |||||||||||| |||||| ||||||||||||||||||||||  |||||||||||| ||||||||||||||||    
T  17746774 atctctattgtacttacag-actttgttattcttattttatatgtgtgtttatttctcattcatttattgcag 17746703  T

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Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 194 - 266
Target Start/End: Complemental strand, 19048094 - 19048023
Alignment:
Q  194 atctctattgtaattacagcactttgttattcttattttatacatgtgtttatttcccattcatttattgcag 266  Q
    |||||||||||| |||||| ||||||||||||||||||||||  |||||||||||| ||||||||||||||||    
T  19048094 atctctattgtacttacag-actttgttattcttattttatatgtgtgtttatttctcattcatttattgcag 19048023  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 215 - 292
Target Start/End: Original strand, 28081414 - 28081493
Alignment:
Q  215 ctttgttattcttattttatacat--gtgtttatttcccattcatttattgcagcaatctagtgggaatatggataattt 292  Q
    ||||| |||||||||||| | |||  |||||||||||||||||||||||||||| |||  ||||||||| ||||| ||||    
T  28081414 ctttgatattcttattttgtgcatatgtgtttatttcccattcatttattgcaggaattgagtgggaatgtggatcattt 28081493  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 262
Target Start/End: Original strand, 27918045 - 27918092
Alignment:
Q  215 ctttgttattcttattttatacatgtgtttatttcccattcatttatt 262  Q
    |||||||||| |||||||||  ||||||||||||||||||| ||||||    
T  27918045 ctttgttattgttattttattaatgtgtttatttcccattcgtttatt 27918092  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 292
Target Start/End: Original strand, 27974226 - 27974297
Alignment:
Q  221 tattcttattttatacatgtgtttatttcccattcatttattgcagcaatctagtgggaatatggataattt 292  Q
    |||||||||||||| |||||||||||||| ||||| |||| || || |||  ||||||||| ||||| ||||    
T  27974226 tattcttattttatgcatgtgtttatttctcattcgtttactgtaggaattgagtgggaatgtggatcattt 27974297  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 28053163 - 28053211
Alignment:
Q  183 agctttttatcatctctattgtaattacagcactttgttattcttattt 231  Q
    |||||||||| |||||||||||| |||||| || |||||||||| ||||    
T  28053163 agctttttattatctctattgtacttacaggacattgttattctcattt 28053211  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 28063588 - 28063636
Alignment:
Q  183 agctttttatcatctctattgtaattacagcactttgttattcttattt 231  Q
    |||||||||| |||||||||||| |||||| || |||||||||| ||||    
T  28063588 agctttttattatctctattgtacttacaggacattgttattctcattt 28063636  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 8019573 - 8019625
Alignment:
Q  214 actttgttattcttattttatacatgtgtttatttcccattcatttattgcag 266  Q
    |||| |||||||||||  ||| ||||||||||||||||||| |||||||||||    
T  8019573 acttggttattcttatcatatgcatgtgtttatttcccatttatttattgcag 8019625  T

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