View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2926_low_44 (Length: 305)
Name: NF2926_low_44
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2926_low_44 |
 | |
|
| [»] scaffold0006 (3 HSPs) |
| | |
|
| [»] scaffold0069 (1 HSPs) |
| | |
|
| [»] scaffold0406 (1 HSPs) |
| | |
|
| [»] scaffold1514 (2 HSPs) |
| | |
|
| [»] scaffold0068 (1 HSPs) |
| | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 20475399 - 20475103
Alignment:
| Q |
1 |
tgctacggagatggcgaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaatt |
100 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
20475399 |
tgctatggagatggcaaaatcacgaacaaagtcatgcatttgaatatttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatttgatt |
20475300 |
T |
|
| Q |
101 |
attgtgtaaagtctatttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctc |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| | |||| |
|
|
| T |
20475299 |
attgtgtaaagtctgtttcttgcatcatccatggcattaatatgcttcaataagtccaaccccattgcaactttgagatagtactctatagactcaccta |
20475200 |
T |
|
| Q |
201 |
gcattaatgcaaaaatcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagttcccgggttcatctc |
297 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
20475199 |
gcattaatgcaaaaagcaagaagagatccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagttcccgggtccatctc |
20475103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 19141124 - 19141410
Alignment:
| Q |
1 |
tgctacggagatggcgaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaatt |
100 |
Q |
| |
|
||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
19141124 |
tgctatggagatagcaaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatttgatt |
19141223 |
T |
|
| Q |
101 |
attgtgtaaagtctatttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctc |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| | |||| |
|
|
| T |
19141224 |
attgtgtaaagtctgtttcttgcatcatccatggcattaatatgcttcaatatgtccaaccccattgcaactttgagaaagtactctata---tcacctg |
19141320 |
T |
|
| Q |
201 |
gcattaatgcaaaaatcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagttcccgggt |
290 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
19141321 |
ccagtaatgcaaaaagcaagaagagagccctcatttcatcactctccaatgagttgtaactgagttccaaagcagaataagttcccgggt |
19141410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 13647910 - 13647628
Alignment:
| Q |
1 |
tgctacggagatggcgaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaatt |
100 |
Q |
| |
|
||||| |||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||| | ||| |
|
|
| T |
13647910 |
tgctatggagatagcaaaatcacgaacaaagtcatgcatttgaatccttccacctgttttaacttcaagcaaaagacaagtcgccttcaaagatttgatt |
13647811 |
T |
|
| Q |
101 |
attgtgtaaagtctatttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctc |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
13647810 |
attgtgtaaagtctgtttcttgcatcatcaatggcattaatatgcttcaatatgtccaatcccattgcaactttgagaaagtactctatatcattaccta |
13647711 |
T |
|
| Q |
201 |
gcattaatgcaaaaatcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagtt |
283 |
Q |
| |
|
||| ||||||||||| |||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
13647710 |
gcagtaatgcaaaaagcaagaagagatctttcatttcatcactctccaaagagttgtaactcaattccaaagcagaataagtt |
13647628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 20366327 - 20366031
Alignment:
| Q |
1 |
tgctacggagatggcgaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaatt |
100 |
Q |
| |
|
||||| |||||| || |||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| ||| ||||||||| | ||| |
|
|
| T |
20366327 |
tgctatggagatagcaaaatcacgaacaaagtcatgcatttggatatttccgtctgttttaacttcaagcaaaagacaagccgcctccaaagatttgatt |
20366228 |
T |
|
| Q |
101 |
attgtgtaaagtctatttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctc |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||| || |||| |
|
|
| T |
20366227 |
attgtgtaaagtctgtttcttgcatcatctatggcattaacatgcttcaatatgtccaacccctttgcaactttgagaaagtactctatatcatcaccta |
20366128 |
T |
|
| Q |
201 |
gcattaatgcaaaaatcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagttcccgggttcatctc |
297 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
20366127 |
gcattaatgcaaaaagcaagaagagatccctcatatcatcactctccaatgagttgtaactcaattccaaagcagaataagttcccgggtccatctc |
20366031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 13608431 - 13608148
Alignment:
| Q |
1 |
tgctacggagatggcgaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaatt |
100 |
Q |
| |
|
||||| |||||| || |||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| ||| ||||||||| | ||| |
|
|
| T |
13608431 |
tgctatggagatagcaaaatcacgaacaaagtcatgcatttggatatttccgtctgttttaacttcaagcaaaagacaagccgcctccaaagatttgatt |
13608332 |
T |
|
| Q |
101 |
attgtgtaaagtctatttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||| | |||| |
|
|
| T |
13608331 |
attgtgtaaagtctatttcttgcatcatctatggcattaacatgcttcaatatgtccaaccccattgcaactttgagaaagtactctata---tcacctg |
13608235 |
T |
|
| Q |
201 |
gcattaatgcaaaaatcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagttcccg |
287 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13608234 |
ccagtaatgcaaaaagcaagaagagagccctcatttcatcactctctaatgagttgtaactcaattccaaagcagaataagttcccg |
13608148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 13682536 - 13682240
Alignment:
| Q |
1 |
tgctacggagatggcgaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaatt |
100 |
Q |
| |
|
||||| |||||| || |||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||| ||| ||||||||| | ||| |
|
|
| T |
13682536 |
tgctatggagatagcaaaatcacgaacaaagtcatgcatttggatatttccaactgttttaacttcaagcaaaagacaagccgcctccaaagatttgatt |
13682437 |
T |
|
| Q |
101 |
attgtgtaaagtctatttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctc |
200 |
Q |
| |
|
||| |||||||||| |||||||||||||| |||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||| | | || |
|
|
| T |
13682436 |
attctgtaaagtctgtttcttgcatcatctatggcattaagatgcttcaatatgtccaaccccattgcaactttgagaaagtactctatttgttcatcta |
13682337 |
T |
|
| Q |
201 |
gcattaatgcaaaaatcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagttcccgggttcatctc |
297 |
Q |
| |
|
| | ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
13682336 |
ggaataatgcaaaaagcaagaagagagccctcatatcatcactctccaatgagttgtaactcaattccaaagcagaataagttcccgggtccatctc |
13682240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 7 - 285
Target Start/End: Complemental strand, 13582163 - 13581885
Alignment:
| Q |
7 |
ggagatggcgaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaattattgtg |
106 |
Q |
| |
|
|||||| || ||||||| |||||||||||||||||| || |||| ||||||||||||||||||||||||| |||| ||||||||| | ||||||| | |
|
|
| T |
13582163 |
ggagatagcaaaatcacaaacaaagtcatgcatttggatatttctgtctgttttaacttcaagcaaaagacatctcgcctccaaagattttattattgag |
13582064 |
T |
|
| Q |
107 |
taaagtctatttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctcgcatta |
206 |
Q |
| |
|
|||||||| |||||||||||||| ||||| |||| ||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
13582063 |
taaagtctgtttcttgcatcatccatggctttaacatgcttcaatatgtccaaccccattgcaactttgagaaagtactctatatcattacctagcatta |
13581964 |
T |
|
| Q |
207 |
atgcaaaaatcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagttcc |
285 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13581963 |
atgcaaaaagcaagaagagatccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagttcc |
13581885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 13503860 - 13503568
Alignment:
| Q |
1 |
tgctacggagatggcgaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaatt |
100 |
Q |
| |
|
||||| |||||| || |||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| ||| ||||||||| | ||| |
|
|
| T |
13503860 |
tgctatggagatagcaaaatcacgaacaaagtcatgcatttggatatttccgtctgttttaacttcaagcaaaagacaagccgcctccaaagatttgatt |
13503761 |
T |
|
| Q |
101 |
attgtgtaaagtctatttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaatt----- |
195 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
13503760 |
attgtgtaaagtctgtttcttgcatcatctatggcattaacatgcttcaatatgtccaaccccattgcaactttgagaaagtactctatatcattatcat |
13503661 |
T |
|
| Q |
196 |
-acctcgcattaatgcaaaaatcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagttcccg |
287 |
Q |
| |
|
|||| ||| ||||||||||| |||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13503660 |
cacctagcagtaatgcaaaaagcaagaagagatccttcatttcatcactctctaatgagttgtaactcaattccaaagcagaataagttcccg |
13503568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 13668437 - 13668153
Alignment:
| Q |
1 |
tgctacggagatggcgaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaatt |
100 |
Q |
| |
|
||||| |||||| || |||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||| |||| ||||||||| | ||| |
|
|
| T |
13668437 |
tgctatggagatagcaaaatcacgaacaaagtcatgcatttggatatttctgtctgttttaacttcaagcaaaagacatctcgcctccaaagatttgatt |
13668338 |
T |
|
| Q |
101 |
attgtgtaaagtctatttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctc |
200 |
Q |
| |
|
|||| ||||||||| |||||||||| ||| |||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||| | || | |
|
|
| T |
13668337 |
attgagtaaagtctgtttcttgcataatctatggcattaacatgcttcaatatgtccaaccctattgcaactttgagaaagtactctacgttttcacgta |
13668238 |
T |
|
| Q |
201 |
gcattaatgcaaaaatcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagttcc |
285 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13668237 |
acagtaatgcaaaaagcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagttcc |
13668153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 15901472 - 15901748
Alignment:
| Q |
1 |
tgctacggagatggcgaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaatt |
100 |
Q |
| |
|
||||| |||||| || |||||||||||||||||||||||||| |||||| || |||||||||||||||||| |||||||||||| ||||||||| | ||| |
|
|
| T |
15901472 |
tgctatggagatagcaaaatcacgaacaaagtcatgcatttggatctttgcatctgttttaacttcaagcagaagacaagtcgcctccaaagatttgatt |
15901571 |
T |
|
| Q |
101 |
attgtgtaaagtctatttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctc |
200 |
Q |
| |
|
|||||||||||| | |||||||||||||| | | |||||||||||| ||| || || |||||||||| ||||||||| || ||| ||||||| |
|
|
| T |
15901572 |
attgtgtaaagtttgtttcttgcatcatccactg------tatgcttcaatatgtctaatcccattgcaacttggagaaagtattcgatatcattacctg |
15901665 |
T |
|
| Q |
201 |
gcattaatgcaaaaatcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagtt |
283 |
Q |
| |
|
||| | ||||||||| |||||||||||||||||||||||||| | ||||||| |||| || ||||||||||||||||||||| |
|
|
| T |
15901666 |
gcagtgatgcaaaaagtaagaagagagccctcatttcatcactttgcaatgagctgtagcttaattccaaagcagaataagtt |
15901748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 13541085 - 13540809
Alignment:
| Q |
1 |
tgctacggagatggcgaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaatt |
100 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||| || |||||| || |||||||||||||| |||||||||||||||| ||||||||| | ||| |
|
|
| T |
13541085 |
tgctacggagatagcaaaatcacgaacaaagtcatgcatatggatctttgcatctgttttaacttcatgcaaaagacaagtcgcctccaaagatttgatt |
13540986 |
T |
|
| Q |
101 |
attgtgtaaagtctatttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctc |
200 |
Q |
| |
|
|||||| ||| | |||||||| ||||| | || |||||||||||| ||| ||||| |||||||||| |||||||||||| | | ||| ||| |
|
|
| T |
13540985 |
attgtgactagtttgtttcttgcgtcatccacgg------tatgcttcaatatgtctaaccccattgcaacttggagaaagtactccacatcattgcctg |
13540892 |
T |
|
| Q |
201 |
gcattaatgcaaaaatcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagtt |
283 |
Q |
| |
|
|| | ||||||||| |||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
13540891 |
acagtgatgcaaaaagtaagaagagagccctcatttcatcactctgcaatgaattgtaacttaattccaaagcagaataagtt |
13540809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 17 - 283
Target Start/End: Original strand, 16470691 - 16470957
Alignment:
| Q |
17 |
aaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaattattgtgtaaagtctat |
116 |
Q |
| |
|
|||| ||||||||| ||||||||||| || || || |||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||| | | |
|
|
| T |
16470691 |
aaattacgaacaaaatcatgcatttggatacatctacttgttttaacttcaagcaaaagacaagtcgcctccaaagatttgattattgtgtaaagtttgt |
16470790 |
T |
|
| Q |
117 |
ttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctcgcattaatgcaaaaat |
216 |
Q |
| |
|
||||||||||||| |||| |||||||||||| || | |||||| || | ||||||||| |||| |||||||| || | ||| ||||||||||| |
|
|
| T |
16470791 |
ttcttgcatcatccatggtattaatatgctttaaaatgtccaaacctactgcaactttcagaacatactctatctctttgattggcagtaatgcaaaaag |
16470890 |
T |
|
| Q |
217 |
caagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagtt |
283 |
Q |
| |
|
|||||||||| ||||| |||||| ||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
16470891 |
caagaagagatccctcgtttcattactctccaatgcgttgtaactcaattccaaagcagaattagtt |
16470957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 22286377 - 22286659
Alignment:
| Q |
1 |
tgctacggagatggcgaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaatt |
100 |
Q |
| |
|
||||| |||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||| | ||| |
|
|
| T |
22286377 |
tgctatggagatagcaaaatcacgaacaaagtcatgcatttgaatccttccacctgttttaacttcaagcaaaagacaagtcgccttcaaagatttgatt |
22286476 |
T |
|
| Q |
101 |
attgtgtaaagtctatttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctc |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
22286477 |
attgtgtaaagtctgtttcttgcatcatcaatggcattaatatgcttcaatatgtccaaacccattgcaactttgagaaagtactctatatcattaccta |
22286576 |
T |
|
| Q |
201 |
gcattaatgcaaaaatcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagtt |
283 |
Q |
| |
|
||| ||||||||||| |||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
22286577 |
gcagtaatgcaaaaagcaagaagagatctttcatttcatcactctccaaagagttgtaactcaattccaaagcagaataagtt |
22286659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 9 - 283
Target Start/End: Complemental strand, 21812122 - 21811854
Alignment:
| Q |
9 |
agatggcgaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaattattgtgta |
108 |
Q |
| |
|
|||| |||||||| ||||| |||||||||||||| |||||||| | | ||||||| |||||||||||||||| || ||||||||| |||| | | || |
|
|
| T |
21812122 |
agatagcgaaatctcgaaccaagtcatgcatttggatctttcccctttttttaacaccaagcaaaagacaagttgcctccaaagattcgattactctata |
21812023 |
T |
|
| Q |
109 |
aagtctatttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctcgcattaat |
208 |
Q |
| |
|
|||| | |||||||||||||||||| |||| || |||| |||||| || ||||||||| | ||| ||||||||| | | || || ||| |||| |
|
|
| T |
21812022 |
aagtatgattcttgcatcatcaatgg------tatgatttaatatgtccaaacccattgcaactctcagagagtactctacaacagtatctggcagtaat |
21811929 |
T |
|
| Q |
209 |
gcaaaaatcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagtt |
283 |
Q |
| |
|
||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
21811928 |
gcaaaaagcaagaagagatcccttatttcatcactctccaatgagttgtaactcaattcaaaagcagaataagtt |
21811854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 137091 - 136808
Alignment:
| Q |
1 |
tgctacggagatggcgaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaatt |
100 |
Q |
| |
|
||||| |||||| || |||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| ||| ||||||||| | ||| |
|
|
| T |
137091 |
tgctatggagatagcaaaatcacgaacaaagtcatgcatttggatatttccgtctgttttaacttcaagcaaaagacaagccgcctccaaagatttgatt |
136992 |
T |
|
| Q |
101 |
attgtgtaaagtctatttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||| | |||| |
|
|
| T |
136991 |
attgtgtaaagtctatttcttgcatcatctatggcattaacatgcttcaatatgtccaaccccattgcaactttgagaaagtactctata---tcacctg |
136895 |
T |
|
| Q |
201 |
gcattaatgcaaaaatcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagttcccg |
287 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
136894 |
ccagtaatgcaaaaagcaagaagagagccctcatttcatcactctctaatgagttgtaactcaattccaaagcagaataagttcccg |
136808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 166051 - 165767
Alignment:
| Q |
1 |
tgctacggagatggcgaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaatt |
100 |
Q |
| |
|
||||| |||||| || |||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||| |||| ||||||||| | ||| |
|
|
| T |
166051 |
tgctatggagatagcaaaatcacgaacaaagtcatgcatttggatatttctgtctgttttaacttcaagcaaaagacatctcgcctccaaagatttgatt |
165952 |
T |
|
| Q |
101 |
attgtgtaaagtctatttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctc |
200 |
Q |
| |
|
|||| ||||||||| |||||||||| ||| |||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||| | || | |
|
|
| T |
165951 |
attgagtaaagtctgtttcttgcataatctatggcattaacatgcttcaatatgtccaaccctattgcaactttgagaaagtactctacgttttcacgta |
165852 |
T |
|
| Q |
201 |
gcattaatgcaaaaatcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagttcc |
285 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
165851 |
acagtaatgcaaaaagcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagttcc |
165767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 52694 - 52412
Alignment:
| Q |
1 |
tgctacggagatggcgaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaatt |
100 |
Q |
| |
|
||||| |||||| || || |||| |||||||||||||||||| ||||||||| || ||||||||||||||||||||||| || ||||| ||| || |
|
|
| T |
52694 |
tgctatggagatagcaaactcacaaacaaagtcatgcatttggatctttccatctactttaacttcaagcaaaagacaagatgcctccaatgattcgatc |
52595 |
T |
|
| Q |
101 |
attgtgtaaagtctatttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||| ||| || |||| ||| | || ||||||||||| ||||||||| || | ||||||| |
|
|
| T |
52594 |
attgtgtaaagtctatttcttgcatcatcaacggtattaacatgttttaatatgtctagacccattgcaactttcagaaagtacaatacatcattacctg |
52495 |
T |
|
| Q |
201 |
gcattaatgcaaaaatcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagtt |
283 |
Q |
| |
|
| | ||| | ||||| |||||| || |||||||||||||||| |||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
52494 |
gaagtaaagaaaaaagcaagaaaaggtccctcatttcatcactatccaatgagtcataactcaattctaaagcagaataagtt |
52412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 297
Target Start/End: Complemental strand, 24317 - 24037
Alignment:
| Q |
17 |
aaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaattattgtgtaaagtctat |
116 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||| ||||||||| | ||||||||||||||||| | |
|
|
| T |
24317 |
aaatcacgaacaaagtcatgcatttggatctttccgtctgttttaacttcaagcaaaagacaagccgcctccaaagatttgattattgtgtaaagtctgt |
24218 |
T |
|
| Q |
117 |
ttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctcgcattaatgcaaaaat |
216 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||| | | || | | ||||||||||| |
|
|
| T |
24217 |
ttcttgcatcatctatggcattaacatgcttcaatatgtccaaccccattgcaactttgagaaagtactctatttgttcatctaggaataatgcaaaaag |
24118 |
T |
|
| Q |
217 |
caagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagttcccgggttcatctc |
297 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24117 |
caagaagagagccctcatatcatcactctccaatgagttgtaactcaattccaaagcagaataagttcccgggtccatctc |
24037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 38059969 - 38060253
Alignment:
| Q |
1 |
tgctacggagatggcgaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaatt |
100 |
Q |
| |
|
|||||||||||| || ||||||||||||||||| |||||||| || ||||| ||||||||||||||||||||||||| | || ||||||||| | ||| |
|
|
| T |
38059969 |
tgctacggagatagcaaaatcacgaacaaagtcgtgcatttggatatttccgtctgttttaacttcaagcaaaagacatcttgcctccaaagatttgatt |
38060068 |
T |
|
| Q |
101 |
attgtgtaaagtctatttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctc |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||| |||||||||||||||||| ||||||||| ||||||||||| |||||||||||||| | |||| |
|
|
| T |
38060069 |
attgtgtaaagtctgtttcttgcatcatccatgacattaatatgcttcaatatgtccaaccccattgcaactttcagaaagtactctatgttttcaccta |
38060168 |
T |
|
| Q |
201 |
gcattaatgcaaaaatcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagttcc |
285 |
Q |
| |
|
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38060169 |
tcggtaatgcaaaaagcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagttcc |
38060253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: scaffold0406
Description:
Target: scaffold0406; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 17 - 297
Target Start/End: Original strand, 10448 - 10728
Alignment:
| Q |
17 |
aaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaattattgtgtaaagtctat |
116 |
Q |
| |
|
||||||||||||| |||||||||||| || ||||| ||||||||||||||||||||||||| |||| ||||||||| | ||||||||||||||||| | |
|
|
| T |
10448 |
aaatcacgaacaatgtcatgcatttggatatttccgtctgttttaacttcaagcaaaagacatttcgcctccaaagatttgattattgtgtaaagtctgt |
10547 |
T |
|
| Q |
117 |
ttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctcgcattaatgcaaaaat |
216 |
Q |
| |
|
|||||||||| || || ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| | |||| || ||||||||||| |
|
|
| T |
10548 |
ttcttgcatcgtccattgcattaatatgcttcaatatgtccaaccccattgcaactttgagaaagtactctatattttgacctaacagtaatgcaaaaag |
10647 |
T |
|
| Q |
217 |
caagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagttcccgggttcatctc |
297 |
Q |
| |
|
||||||||| ||||||||||||||||||| || ||| ||||||||||||||||||| ||| |||| || ||| |||||| |
|
|
| T |
10648 |
aaagaagagatccctcatttcatcactctctaagaagtagtaactcaattccaaagcaaaattagttgcccggtccatctc |
10728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1514 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: scaffold1514
Description:
Target: scaffold1514; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 115 - 297
Target Start/End: Complemental strand, 587 - 405
Alignment:
| Q |
115 |
atttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctcgcattaatgcaaaa |
214 |
Q |
| |
|
||||||||||| ||| ||| |||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||| | || | |||||||||||||| |
|
|
| T |
587 |
atttcttgcattatctatgacattaatatgcttcaatatgtccaaccccattgaaactttgagaaagtactctatagactcacatagcattaatgcaaaa |
488 |
T |
|
| Q |
215 |
atcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagttcccgggttcatctc |
297 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
487 |
agcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagttcccgggtccatctc |
405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1514; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 743 - 606
Alignment:
| Q |
1 |
tgctacggagatggcgaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaatt |
100 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||| |||| ||||||||| | ||| |
|
|
| T |
743 |
tgctacggagatagcaaaatcacgaacaaagtcatgcatttggataattccatctgttttaacttcaagcaaaagacatctcgcctccaaagatttgatt |
644 |
T |
|
| Q |
101 |
attgtgtaaagtctatttcttgcatcatcaatggcatt |
138 |
Q |
| |
|
||||| |||||||| |||||||||||||| ||| |||| |
|
|
| T |
643 |
attgtataaagtctgtttcttgcatcatcgatgacatt |
606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 43375 - 43651
Alignment:
| Q |
1 |
tgctacggagatggcgaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaatt |
100 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||| || |||||| || |||||||||||||| |||||||||||||||| ||||||||| | ||| |
|
|
| T |
43375 |
tgctacggagatagcaaaatcacgaacaaagtcatgcatatggatctttgcatctgttttaacttcatgcaaaagacaagtcgcctccaaagatttgatt |
43474 |
T |
|
| Q |
101 |
attgtgtaaagtctatttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctc |
200 |
Q |
| |
|
|||||| ||| | |||||||| ||||| | || |||||||||||| ||| ||||| |||||||||| |||||||||||| | | ||| ||| |
|
|
| T |
43475 |
attgtgactagtttgtttcttgcgtcatccacgg------tatgcttcaatatgtctaaccccattgcaacttggagaaagtactccacatcattgcctg |
43568 |
T |
|
| Q |
201 |
gcattaatgcaaaaatcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagtt |
283 |
Q |
| |
|
|| | ||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
43569 |
acagtgatgcaaaaagtaagaagagagccctcatttcatcactctgcaatgagttgtaacttaattccaaagcagaataagtt |
43651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 113648 - 113366
Alignment:
| Q |
1 |
tgctacggagatggcgaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaatt |
100 |
Q |
| |
|
||||| |||||| || || |||| |||||||||||||||||| ||||||||| || ||||||||||||||||||||||| || ||||||||| || |
|
|
| T |
113648 |
tgctatggagatagcaaactcacaaacaaagtcatgcatttggatctttccatctactttaacttcaagcaaaagacaagatgcctccaaagattcgatc |
113549 |
T |
|
| Q |
101 |
attgtgtaaagtctatttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||| || |||| ||||| || ||||||||||| ||||||||| || | ||||||| |
|
|
| T |
113548 |
attgtgtaaagtctatttcttgcatcatcaacaatattaacatgttttaatatgtccagacccattgcaactttcagaaagtacgatacatcattacctg |
113449 |
T |
|
| Q |
201 |
gcattaatgcaaaaatcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagtt |
283 |
Q |
| |
|
| | ||||| ||||| ||||||||| |||||||||||||||| |||||||||| || |||||||||||||||||||||||| |
|
|
| T |
113448 |
gaagtaatgaaaaaagcaagaagaggtccctcatttcatcactatccaatgagtcatagctcaattccaaagcagaataagtt |
113366 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 20816995 - 20817277
Alignment:
| Q |
1 |
tgctacggagatggcgaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaatt |
100 |
Q |
| |
|
||||| |||||| || || |||| |||||||||||||||||| ||||||||| || |||||||||||||||||||||||| || ||||||||| || |
|
|
| T |
20816995 |
tgctatggagatagcaaactcacaaacaaagtcatgcatttggatctttccatctactttaacttcaagcaaaagacaagttgcctccaaagattcgatc |
20817094 |
T |
|
| Q |
101 |
attgtgtaaagtctatttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctc |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||| || ||||| ||| || |||| ||| | || ||||||| ||| ||||||||| || | |||||||| |
|
|
| T |
20817095 |
attgtgtaaagtttatttcttgcatcatcaaaggtattaacatgttttaatatgtctagacccattgcaatttttagaaagtacgatacataattacctg |
20817194 |
T |
|
| Q |
201 |
gcattaatgcaaaaatcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagtt |
283 |
Q |
| |
|
| | ||| | ||||| |||||| || |||||||||||||||| |||||||||| || |||||||||||||||||||||||| |
|
|
| T |
20817195 |
gaagtaaagaaaaaagcaagaaaaggtccctcatttcatcactatccaatgagtcatagctcaattccaaagcagaataagtt |
20817277 |
T |
|
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