View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2926_low_45 (Length: 303)
Name: NF2926_low_45
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2926_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-147; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 2327090 - 2327376
Alignment:
| Q |
1 |
caccagggcattttgtgttgcctcatgcaatgagcgatgatgtggttttgaatggttatttggtgcctaaaaatgggacggtcaattttatggtggcaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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|
| T |
2327090 |
caccagggcattttgtgttgcctcatgcagtgagcgatgatgtggttttgaatggttatttggtgcctaaaaatgggacggtgaatttcatggtggcaga |
2327189 |
T |
|
| Q |
101 |
gatggggtgggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaagagatc |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2327190 |
gatggggttggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaagagatc |
2327289 |
T |
|
| Q |
201 |
aagatgatgccgtttggagctgatagaagaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatttg |
287 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2327290 |
aagatgatgccgtttggagctggtaggagaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatttg |
2327376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 2330805 - 2331091
Alignment:
| Q |
1 |
caccagggcattttgtgttgcctcatgcaatgagcgatgatgtggttttgaatggttatttggtgcctaaaaatgggacggtcaattttatggtggcaga |
100 |
Q |
| |
|
||||||||||||| ||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||| |
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|
| T |
2330805 |
caccagggcatttcgtgttgcctcacgcagtgagcgaggatgtggttttgaatggttatttggtgcctaaagatgggacggtgaattttatggttgcaga |
2330904 |
T |
|
| Q |
101 |
gatggggtgggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaagagatc |
200 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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|
| T |
2330905 |
gatggggttggaccctcgtgtttgggaggatccaatggaatttaagccagaaaggtttttgaaggatgagacttttgacattacaggaagtaaagagata |
2331004 |
T |
|
| Q |
201 |
aagatgatgccgtttggagctgatagaagaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatttg |
287 |
Q |
| |
|
||||||||||| |||||||||| || ||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||| |
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|
| T |
2331005 |
aagatgatgccatttggagctgggaggagaatttgtcctggatataatttagctttgcttcatttggaatattttgtggctaatttg |
2331091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 39 - 283
Target Start/End: Original strand, 2321275 - 2321519
Alignment:
| Q |
39 |
gatgtggttttgaatggttatttggtgcctaaaaatgggacggtcaattttatggtggcagagatggggtgggatcctcgtgtttgggaggatccaatgg |
138 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| ||||| ||| || | ||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
2321275 |
gatgtggttttgaacggttatttggtgcctaaaaatgggacggtgaatttcatgctgtcggagatggcgtgggatcctcgtgtttgggaggatccaatgg |
2321374 |
T |
|
| Q |
139 |
agtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaagagatcaagatgatgccgtttggagctgatagaagaatttgtcc |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| || ||||||||||| |
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|
| T |
2321375 |
agtttaagccagaaaggtttttgaaggatgagacttttgatattatagggagtaaagagataaagatgatgccgtttggagctggaaggagaatttgtcc |
2321474 |
T |
|
| Q |
239 |
gggatataatttagctttactccatttggaatattttgtggctaa |
283 |
Q |
| |
|
||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2321475 |
cggacttaatttagctttgctccatttggaatattttgtggctaa |
2321519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 2303535 - 2303821
Alignment:
| Q |
1 |
caccagggcattttgtgttgcctcatgcaatgagcgatgatgtggttttgaatggttatttggtgcctaaaaatgggacggtcaattttatggtggcaga |
100 |
Q |
| |
|
|||| ||||||||| ||||||| || || ||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||| ||| |||| || |
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|
| T |
2303535 |
caccggggcattttctgttgccacacgcggtgaaagaggatgtggttttgaacggttatttggtgcctaaaaatgggacggtgaatttcatgctggcgga |
2303634 |
T |
|
| Q |
101 |
gatggggtgggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaagagatc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||| ||||| |
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|
| T |
2303635 |
gatggggtgggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggttttggaaggatgagaattttgacattacagggagtaaggagata |
2303734 |
T |
|
| Q |
201 |
aagatgatgccgtttggagctgatagaagaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatttg |
287 |
Q |
| |
|
|||||||||||||||| |||||| || ||||||||||| | | |||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
2303735 |
aagatgatgccgtttgaagctgaaaggagaatttgtcctgcacttaatttagctttgctccatttagaatattttgtggctaatttg |
2303821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 39 - 287
Target Start/End: Original strand, 2351149 - 2351397
Alignment:
| Q |
39 |
gatgtggttttgaatggttatttggtgcctaaaaatgggacggtcaattttatggtggcagagatggggtgggatcctcgtgtttgggaggatccaatgg |
138 |
Q |
| |
|
|||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2351149 |
gatgtgctttttaacggttatttggtgcctaaaaatgggacggtcaattttatggtggcagagatggggtgggatcctcgtgtttgggaggatccaatgg |
2351248 |
T |
|
| Q |
139 |
agtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaagagatcaagatgatgccgtttggagctgatagaagaatttgtcc |
238 |
Q |
| |
|
||||||||||||| ||||||||||||||||| || ||||| ||||| |||||||||||||| ||||||||||| ||||| | || ||| ||||| ||||| |
|
|
| T |
2351249 |
agtttaagccagagaggtttttgaaggatgaaacatttgacattacggggagtaaagagataaagatgatgccatttggtgttggtaggagaatctgtcc |
2351348 |
T |
|
| Q |
239 |
gggatataatttagctttactccatttggaatattttgtggctaatttg |
287 |
Q |
| |
|
||||||||||||||||| || || |||||||||||||||||||||||| |
|
|
| T |
2351349 |
cggatataatttagctttgcttcacttggaatattttgtggctaatttg |
2351397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 39 - 283
Target Start/End: Original strand, 2293960 - 2294204
Alignment:
| Q |
39 |
gatgtggttttgaatggttatttggtgcctaaaaatgggacggtcaattttatggtggcagagatggggtgggatcctcgtgtttgggaggatccaatgg |
138 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||| |||||||| ||||| || |||| ||||||| || ||||||||||||||||||||| || ||| |
|
|
| T |
2293960 |
gatgtggttttggacggttatttggtgcctaaaaacgggacggtgaatttcttgctggcggagatggcgttggatcctcgtgtttgggaggacccgttgg |
2294059 |
T |
|
| Q |
139 |
agtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaagagatcaagatgatgccgtttggagctgatagaagaatttgtcc |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2294060 |
agtttaagccagaaaggtttttgaaggatgagacttttgacattacaggaagtaaagagataaagatgatgccgtttggagctggaagaagaatttgtcc |
2294159 |
T |
|
| Q |
239 |
gggatataatttagctttactccatttggaatattttgtggctaa |
283 |
Q |
| |
|
||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2294160 |
cggacttaatttagctttgctccatttggaatattttgtggctaa |
2294204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 39 - 287
Target Start/End: Original strand, 2310291 - 2310539
Alignment:
| Q |
39 |
gatgtggttttgaatggttatttggtgcctaaaaatgggacggtcaattttatggtggcagagatggggtgggatcctcgtgtttgggaggatccaatgg |
138 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||| |||||||| ||||| | |||| ||||||| || ||||| ||||||||||||||| ||| ||| |
|
|
| T |
2310291 |
gatgtggttttggacggttatttggtgcctaaaaacgggacggtgaatttctttctggcggagatggcgttggatcgtcgtgtttgggaggacccattgg |
2310390 |
T |
|
| Q |
139 |
agtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaagagatcaagatgatgccgtttggagctgatagaagaatttgtcc |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2310391 |
agtttaagccagaaaggtttttgaaggatgagacttttgtcattccaggaagtaaagagataaagatgatgccgtttggagctggaagaagaatttgtcc |
2310490 |
T |
|
| Q |
239 |
gggatataatttagctttactccatttggaatattttgtggctaatttg |
287 |
Q |
| |
|
||| |||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2310491 |
cggacttaatttagctttgctccatttggaatattttgtggctaatttg |
2310539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 41127117 - 41127403
Alignment:
| Q |
1 |
caccagggcattttgtgttgcctcatgcaatgagcgatgatgtggttttgaatggttatttggtgcctaaaaatgggacggtcaattttatggtggcaga |
100 |
Q |
| |
|
|||| ||||| ||||||||||| ||||| ||| || ||||||||||| | ||||| ||| |||||||||||| | || ||||| ||||||||||| |
|
|
| T |
41127117 |
caccggggcactttgtgttgccccatgcggtgaaggaggatgtggttttcgacggttacttgctgcctaaaaatgtggtagtgaatttcatggtggcaga |
41127216 |
T |
|
| Q |
101 |
gatggggtgggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaagagatc |
200 |
Q |
| |
|
|| ||| |||| ||| |||||||||| |||||| |||||||||| |||||||||||||||||||||||| ||||||||||||| |||| ||||||||| |
|
|
| T |
41127217 |
catagggagggaccctagtgtttgggaagatccattggagtttaaaccagaaaggtttttgaaggatgaggcttttgatattaccgggactaaagagata |
41127316 |
T |
|
| Q |
201 |
aagatgatgccgtttggagctgatagaagaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatttg |
287 |
Q |
| |
|
||||||||||||||||||| || || ||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
41127317 |
aagatgatgccgtttggagttgggaggagaatttgtcctggatataatttagctttgctccatttggaatactttgtggctaatttg |
41127403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 158
Target Start/End: Original strand, 26506749 - 26506883
Alignment:
| Q |
24 |
catgcaatgagcgatgatgtggttttgaatggttatttggtgcctaaaaatgggacggtcaattttatggtggcagagatggggtgggatcctcgtgttt |
123 |
Q |
| |
|
|||||| ||| ||| |||||| |||| || ||||| |||||||||||||||||||| || |||||||||||||||||| | ||||||||||| |||||| |
|
|
| T |
26506749 |
catgcagtgaccgaggatgtgatttttaacggttacttggtgcctaaaaatgggacagttaattttatggtggcagaggttgggtgggatccaagtgttt |
26506848 |
T |
|
| Q |
124 |
gggaggatccaatggagtttaagccagaaaggttt |
158 |
Q |
| |
|
|||||||||| |||| || |||||||| |||||| |
|
|
| T |
26506849 |
gggaggatcccatggcattcaagccagataggttt |
26506883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 158
Target Start/End: Original strand, 26494725 - 26494838
Alignment:
| Q |
45 |
gttttgaatggttatttggtgcctaaaaatgggacggtcaattttatggtggcagagatggggtgggatcctcgtgtttgggaggatccaatggagttta |
144 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| || ||||||||||||||||| || || | ||||| |||||||||||||| | || ||||| |
|
|
| T |
26494725 |
gttttgaatggttacttggtgcctaaaaatgggactgtgaattttatggtggcagatataggattagatccaacggtttgggaggatcctacggtgttta |
26494824 |
T |
|
| Q |
145 |
agccagaaaggttt |
158 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
26494825 |
agccagagaggttt |
26494838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 55017070 - 55017117
Alignment:
| Q |
175 |
ttgatattacagggagtaaagagatcaagatgatgccgtttggagctg |
222 |
Q |
| |
|
||||||||||||| | ||||||||| ||||||||||||||||| |||| |
|
|
| T |
55017070 |
ttgatattacaggaactaaagagatgaagatgatgccgtttggtgctg |
55017117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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