View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2926_low_47 (Length: 294)
Name: NF2926_low_47
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2926_low_47 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 35013501 - 35013224
Alignment:
| Q |
1 |
agaattaatagaaagtgacattactggatgcaactaaattagttagccagatgatatatattgtcacatatagagtgatacattaattgatcaaagctac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35013501 |
agaattaatagaaagtgacattactggatgcaactaaattagttagccagatgatatatattgtcacatatagagtgatacattaattgatcaaagctac |
35013402 |
T |
|
| Q |
101 |
tttatcttttgacagaattaatcaaagctacttattcctcttcaataacagcattcatgaaaagggaagattgatcataaaaaatgtgtgatatcaaccc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35013401 |
tttatcttttgacagaattaatcaaagctacttattcctcttcaataacagcattcatgaaaagggaagattgatcataaaaaatgtgtgatttcaaccc |
35013302 |
T |
|
| Q |
201 |
cttagctcaataatgagactttttcttacaatctttcatggcatatgcttttggtgaaagaattaaagtaggtatatg |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35013301 |
cttagctcaataatgagactttttcttacaatctttcatggcatatgcttttggtgaaagaattaaagtaggtatatg |
35013224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 4459634 - 4459487
Alignment:
| Q |
1 |
agaattaatagaaagtgacattactggatgcaactaaattagttagccagatgatatatattgtcacatatagagtgatacattaattgatcaaagctac |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4459634 |
agaattaatagaaagtgaaattactggatgtaactaaattagttagccagatgatatatattgtcacatatagagtgatacattaattgatcaaagctac |
4459535 |
T |
|
| Q |
101 |
tttatcttttgacagaattaatcaaagctacttattcctcttcaataacag |
151 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
4459534 |
tttatcttttgacagaattaat---agctactcattcctcttcaataacag |
4459487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University