View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2926_low_5 (Length: 636)
Name: NF2926_low_5
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2926_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 8 - 618
Target Start/End: Complemental strand, 48450583 - 48449963
Alignment:
| Q |
8 |
gagcagagacaatataaaattaaaatgaaatcaaggcctgctagtttgaaaaaagtgccagaagtgtatacagttataaaagtgtcatgttgttttcatc |
107 |
Q |
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| T |
48450583 |
gagcagagacaatataaaattaaaatgaaatcaaggcctgctagtttgaaaaaagtgccagaagtgtatacggttataaaagtgtcatgttgttttcatc |
48450484 |
T |
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| Q |
108 |
atgcttcctacaaccatttctcctacacccaatttgtgactaactaacaaaagtggatgcagttaaaactaacttataacaaacttctaatagcacttct |
207 |
Q |
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| T |
48450483 |
atgcttcctacaaccatttctcctacacccaatttgtgactaactaacaaaagtggatgcagttaaaactaacttataacaaacttctaatagcacttct |
48450384 |
T |
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| Q |
208 |
atgcaataactaaatcaacaattggaaactccacactaaaacaaagacaataaatttaatgagttattaagatgaagaaatggatgattttccaaatcaa |
307 |
Q |
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| T |
48450383 |
atgcaataactaaatcaacaattggaaactccacactaaaacaaagacaataaatttaatgagttattaagatgaagaaatggatgattttccaaatcaa |
48450284 |
T |
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| Q |
308 |
gaatcacgggatatccttaacctgttctctt----------tttccttctccaccattatactaaaagttccaaatcagatatggacagttctctacatc |
397 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48450283 |
gaatcacgggatatccttaacctgttctcgttttccttcactttccttctccaccattatactaaaagttccaaatcagatatggacagttctctacatc |
48450184 |
T |
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| Q |
398 |
ataaattccaataccaaccaagattcaagaataccaaaaaatgaaaccattttctaccatttgaccaaaactacaacttgcaagaaattaagatctagtc |
497 |
Q |
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| T |
48450183 |
ataaattccaataccaaccaagattcaagaataccaaaaaatgaaaccattttctaccatttgaccaaaactacaacttgcaagaaattaagatctagtc |
48450084 |
T |
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| Q |
498 |
ataaaacagctagctgaatcactgtgaaatgctacattggaaagattaacactaaagatataaaaatcacannnnnnncaagttattatataccagatca |
597 |
Q |
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| T |
48450083 |
ataaaacagctagctgaatcactgtgaaatgctacattggaaagaataacattaaagatataaaaatcatatttttttcaagttattatataccagatca |
48449984 |
T |
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| Q |
598 |
aaatcatattacataagcagt |
618 |
Q |
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| T |
48449983 |
aactcatattacataagcagt |
48449963 |
T |
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