View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2926_low_52 (Length: 289)
Name: NF2926_low_52
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2926_low_52 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 271
Target Start/End: Original strand, 29107761 - 29108015
Alignment:
| Q |
17 |
cacagaagctgaaaacaaaacactcgtctaaatcaaaatatatcttgtcaaatactccatagttaaagtatccattttcgaaaagtatttaccaaattgc |
116 |
Q |
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| T |
29107761 |
cacagaagctgaaaacaaaacactcgttcaaatcaaaatatatcttgtcaaatactccatagttaaagtatccattttcgaaaagtatttaccaaattgc |
29107860 |
T |
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| Q |
117 |
agttaacactttcttgacattactagtacaaaaactctaaaataacctcgacaaatactcgttgattttccctttgttaacaattagctttgatatatac |
216 |
Q |
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| T |
29107861 |
agttaacactttcttgatattactagtacaaaaactctacaataacctcgacaaatactcgttgattttccctttgttaataattagctttgatatatac |
29107960 |
T |
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| Q |
217 |
cgaaaggcttttatgtaataaaatctgaattctcagaattgtaagccgctcctac |
271 |
Q |
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| T |
29107961 |
cgaaaggcttttatgtaataaaatctgaattctcagaattgtaagccgctcctac |
29108015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 147
Target Start/End: Complemental strand, 29851155 - 29851087
Alignment:
| Q |
80 |
taaagtatccattttcgaaaag-tatttaccaaattgcagttaacactttcttgacattactagtacaa |
147 |
Q |
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| T |
29851155 |
taaagtatccattttcagaaagatatctgccaaactgcagttaacactttcttggcatcacaagtacaa |
29851087 |
T |
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