View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2926_low_53 (Length: 288)
Name: NF2926_low_53
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2926_low_53 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 21 - 209
Target Start/End: Complemental strand, 37272777 - 37272589
Alignment:
| Q |
21 |
ttagcagcttcagggtttgtatcaacacaagatgcaattgctagtgaaatggctgcaattgctgaagctgctggtagtgataacaggggtcagcttctgt |
120 |
Q |
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| T |
37272777 |
ttagcagcttcagggtttgtatcaacacaagatgcaattgctagtgaaatgactgcaattgctgaagctgctggtagtgataacaggggtcagcttctgt |
37272678 |
T |
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| Q |
121 |
tgtttgttgtagcaccagctattctttgggttctttataatattttgcagcctgctcttaaccaaatcaacagaatgagacagtgaaac |
209 |
Q |
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| T |
37272677 |
tgtttgtggtaacaccagctattctttgggttctttataatattttgcagcctgctcttaaccaaatcaacagaatgagacagtgaaac |
37272589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 105 - 209
Target Start/End: Complemental strand, 37268655 - 37268551
Alignment:
| Q |
105 |
aggggtcagcttctgttgtttgttgtagcaccagctattctttgggttctttataatattttgcagcctgctcttaaccaaatcaacagaatgagacagt |
204 |
Q |
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| T |
37268655 |
agggctcagcttctgttatttgtggttgcaccagctattctttgggttctttataatattttgcagcctgctcttaaccaaatcaacagaatgagacggt |
37268556 |
T |
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| Q |
205 |
gaaac |
209 |
Q |
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| T |
37268555 |
gaaac |
37268551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 87 - 200
Target Start/End: Complemental strand, 39017088 - 39016975
Alignment:
| Q |
87 |
gctgctggtagtgataacaggggtcagcttctgttgtttgttgtagcaccagctattctttgggttctttataatattttgcagcctgctcttaaccaaa |
186 |
Q |
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| T |
39017088 |
gctgctggaagtgacaacaggggaacacttctgttgtttgttgttgcaccagctatcctttgggtgctgtacaatattttgcagcctgctctcaaccaga |
39016989 |
T |
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| Q |
187 |
tcaacagaatgaga |
200 |
Q |
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| T |
39016988 |
tcaacaggatgaga |
39016975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 20580830 - 20580779
Alignment:
| Q |
21 |
ttagcagcttcagggtttgtatcaacacaagatgcaattgctagtgaaatgg |
72 |
Q |
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| T |
20580830 |
ttagcagcttcagggtttgtgtcaacacaagatgcaatggctagtgaaatgg |
20580779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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