View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2926_low_54 (Length: 267)
Name: NF2926_low_54
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2926_low_54 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 11 - 267
Target Start/End: Original strand, 33411905 - 33412161
Alignment:
| Q |
11 |
cacagacaagcaaagacaatgtgacaaatgcagctaaacttgctggtggaattttgaagcttccaatgtgtctgtcaagtgttgttccttgttttacaaa |
110 |
Q |
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| T |
33411905 |
cacagacaagcaaggacaatgtgacaaatgcagctaaacttgctggtggaattttgaagcttccaatgtgtctgtcaagtgttgttccttgttttacaaa |
33412004 |
T |
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| Q |
111 |
aagggtgtttacttgagccatcattgtacttggaacaaatgtagcaaccaagattggtatcatccttagcatttgttttgtctcttctacatgtgtaact |
210 |
Q |
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| T |
33412005 |
aagggtgtttacttgagccatcattgtacttggaacaaatgtagcaaccaagattggaatcatccttagcatttgttttgtctcttctacatgtgtaact |
33412104 |
T |
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| Q |
211 |
gtgcataacatccatggactagttgagcctgttttgacacttgccttgtctaggaac |
267 |
Q |
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| T |
33412105 |
gtgcataacatccatggactagttgagcctgttttgacacttgccttgtctaggaac |
33412161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 34 - 211
Target Start/End: Complemental strand, 15729807 - 15729630
Alignment:
| Q |
34 |
acaaatgcagctaaacttgctggtggaattttgaagcttccaatgtgtctgtcaagtgttgttccttgttttacaaaaagggtgtttacttgagccatca |
133 |
Q |
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| T |
15729807 |
acaaatgtacctaaacttgctggtggaattttgaaactcccaatgcctctatcaagtgttgttccttgtttcacaaacaatgtatttatttgagcaatca |
15729708 |
T |
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| Q |
134 |
ttgtacttggaacaaatgtagcaaccaagattggtatcatccttagcatttgttttgtctcttctacatgtgtaactg |
211 |
Q |
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| T |
15729707 |
ttgtactaggaattaatgtagtagccatgattgggatcattcttatcatttgtttggtctcctctacatgtgtaactg |
15729630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 36 - 224
Target Start/End: Complemental strand, 15766392 - 15766204
Alignment:
| Q |
36 |
aaatgcagctaaacttgctggtggaattttgaagcttccaatgtgtctgtcaagtgttgttccttgttttacaaaaagggtgtttacttgagccatcatt |
135 |
Q |
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| T |
15766392 |
aaatgcagctaaacttgatggtggaatatggaagttgccaatggatctgttaagagtagttccttgttttacaaaaagggtatttatttgagctatcatt |
15766293 |
T |
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| Q |
136 |
gtacttggaacaaatgtagcaaccaagattggtatcatccttagcatttgttttgtctcttctacatgtgtaactgtgcataacatcca |
224 |
Q |
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| T |
15766292 |
gcacttggaataaatgttgcaacccaaatagggactaagctaaggatttgtttggtttcttccacttgtgttactgtgcataacatcca |
15766204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 34 - 209
Target Start/End: Complemental strand, 15737410 - 15737235
Alignment:
| Q |
34 |
acaaatgcagctaaacttgctggtggaattttgaagcttccaatgtgtctgtcaagtgttgttccttgttttacaaaaagggtgtttacttgagccatca |
133 |
Q |
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| T |
15737410 |
acaaatgtacctaaacttgctggtggaatttggaaactcccaatgtctctatcaagtgttgttccttgcttcacaaagagtgtatttatttgagcaacca |
15737311 |
T |
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| Q |
134 |
ttgtacttggaacaaatgtagcaaccaagattggtatcatccttagcatttgttttgtctcttctacatgtgtaac |
209 |
Q |
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| T |
15737310 |
ttgtactaggaattaatgttgtagctaaaattgggatcattcttagcatttgtttggtctcctctacgtgtgtaac |
15737235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 38 - 225
Target Start/End: Complemental strand, 15755521 - 15755334
Alignment:
| Q |
38 |
atgcagctaaacttgctggtggaattttgaagcttccaatgtgtctgtcaagtgttgttccttgttttacaaaaagggtgtttacttgagccatcattgt |
137 |
Q |
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| T |
15755521 |
atgcagttaaacttgctggaggaacttttaagttgccaatggatctgttaagagtagttccttgttttatgaaaagggtatttatttgagcaatcattgc |
15755422 |
T |
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| Q |
138 |
acttggaacaaatgtagcaaccaagattggtatcatccttagcatttgttttgtctcttctacatgtgtaactgtgcataacatccat |
225 |
Q |
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| T |
15755421 |
acttggaataaatgtggcaacccaaataggtattaagctaaggatttgtttggtttcctctacttgtgttattgtgcataacatccat |
15755334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 206
Target Start/End: Complemental strand, 15779498 - 15779337
Alignment:
| Q |
45 |
taaacttgctggtggaattttgaagcttccaatgtgtctgtcaagtgttgttccttgttttacaaaaagggtgtttacttgagccatcattgtacttgga |
144 |
Q |
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| T |
15779498 |
taaacttgatggaggaatatcgaagttgccaatggctctgtcgagtgtagatccttgctttacaaacaaggtatttatctgagcaatcattgcactagga |
15779399 |
T |
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| Q |
145 |
acaaatgtagcaaccaagattggtatcatccttagcatttgttttgtctcttctacatgtgt |
206 |
Q |
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| T |
15779398 |
ataaatgtagcaacccaaatagggattacacttaggatttgtttggtctcctctacttgtgt |
15779337 |
T |
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