View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2926_low_60 (Length: 259)

Name: NF2926_low_60
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2926_low_60
NF2926_low_60
[»] chr3 (2 HSPs)
chr3 (3-189)||(45083197-45083388)
chr3 (209-244)||(45083408-45083443)
[»] scaffold0152 (2 HSPs)
scaffold0152 (8-51)||(4183-4226)
scaffold0152 (8-51)||(8431-8474)
[»] chr4 (7 HSPs)
chr4 (8-53)||(22796764-22796809)
chr4 (12-60)||(37575845-37575893)
chr4 (12-50)||(7367973-7368011)
chr4 (24-54)||(20031875-20031905)
chr4 (9-50)||(22662170-22662211)
chr4 (9-50)||(22666649-22666690)
chr4 (20-52)||(41336881-41336913)
[»] chr5 (1 HSPs)
chr5 (8-51)||(21196177-21196220)
[»] chr6 (2 HSPs)
chr6 (20-50)||(31811643-31811673)
chr6 (9-45)||(3738211-3738247)
[»] chr1 (3 HSPs)
chr1 (9-51)||(29045851-29045893)
chr1 (20-53)||(172489-172522)
chr1 (13-50)||(30013998-30014035)
[»] chr7 (1 HSPs)
chr7 (3-47)||(4001691-4001735)
[»] chr2 (1 HSPs)
chr2 (3-55)||(15370237-15370289)


Alignment Details
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 3 - 189
Target Start/End: Original strand, 45083197 - 45083388
Alignment:
Q  3 cacagatgcttatgcttgtagataaactcaaatatgtcaatccaaacaagcctgtagtggcataacattccttagaaactgtcggcataattttaacgag 102  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  45083197 cacaaatgcttatgcttgtagataaactcaaatatgtcaatccaaacaagtctgtagtggcataacattccttagaaactgtcggcataattttaacgag 45083296  T
Q  103 cgttgggtctagtctatcagaagggctagtgtcc-----tacaatgtggtatgtggagaactaatgtctcgctcttgtggagggaacctatg 189  Q
    ||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45083297 cgttgggtctagtctatcagaagggctagtgtcctacaatacaatgtggtatgtggagaactaatgtctcgctcttgtggagggaacctatg 45083388  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 209 - 244
Target Start/End: Original strand, 45083408 - 45083443
Alignment:
Q  209 ccaacatagatttttctattataatgatgaatgttg 244  Q
    ||||||||||||||||||||||||||||||||||||    
T  45083408 ccaacatagatttttctattataatgatgaatgttg 45083443  T

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Target: scaffold0152 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 4226 - 4183
Alignment:
Q  8 atgcttatgcttgtagataaactcaaatatgtcaatccaaacaa 51  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||    
T  4226 atgcttatgcttgtagacaaactcaaataagtcaatccaaacaa 4183  T

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Target: scaffold0152; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 8474 - 8431
Alignment:
Q  8 atgcttatgcttgtagataaactcaaatatgtcaatccaaacaa 51  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||    
T  8474 atgcttatgcttgtagacaaactcaaataagtcaatccaaacaa 8431  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 22796764 - 22796809
Alignment:
Q  8 atgcttatgcttgtagataaactcaaatatgtcaatccaaacaagc 53  Q
    ||||||||||| |||||||||||||||||  |||||||||||||||    
T  22796764 atgcttatgctagtagataaactcaaataaatcaatccaaacaagc 22796809  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 37575893 - 37575845
Alignment:
Q  12 ttatgcttgtagataaactcaaatatgtcaatccaaacaagcctgtagt 60  Q
    ||||||| | ||||||||||||||| |||||||||||||||||| ||||    
T  37575893 ttatgctagcagataaactcaaataagtcaatccaaacaagcctttagt 37575845  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 7368011 - 7367973
Alignment:
Q  12 ttatgcttgtagataaactcaaatatgtcaatccaaaca 50  Q
    |||||| |||||||||||||||||| |||||||||||||    
T  7368011 ttatgcctgtagataaactcaaataagtcaatccaaaca 7367973  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 54
Target Start/End: Original strand, 20031875 - 20031905
Alignment:
Q  24 ataaactcaaatatgtcaatccaaacaagcc 54  Q
    |||||||||||||||||||||||||||||||    
T  20031875 ataaactcaaatatgtcaatccaaacaagcc 20031905  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 22662211 - 22662170
Alignment:
Q  9 tgcttatgcttgtagataaactcaaatatgtcaatccaaaca 50  Q
    |||||||| | ||||||||||||||||| |||||||||||||    
T  22662211 tgcttatgttagtagataaactcaaataagtcaatccaaaca 22662170  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 22666690 - 22666649
Alignment:
Q  9 tgcttatgcttgtagataaactcaaatatgtcaatccaaaca 50  Q
    |||||||| | ||||||||||||||||| |||||||||||||    
T  22666690 tgcttatgttagtagataaactcaaataagtcaatccaaaca 22666649  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 41336881 - 41336913
Alignment:
Q  20 gtagataaactcaaatatgtcaatccaaacaag 52  Q
    ||||||||||||||||| |||||||||||||||    
T  41336881 gtagataaactcaaataagtcaatccaaacaag 41336913  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 21196220 - 21196177
Alignment:
Q  8 atgcttatgcttgtagataaactcaaatatgtcaatccaaacaa 51  Q
    ||||||||||||||||| ||| ||||||| ||||||||||||||    
T  21196220 atgcttatgcttgtagacaaaatcaaataagtcaatccaaacaa 21196177  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 50
Target Start/End: Complemental strand, 31811673 - 31811643
Alignment:
Q  20 gtagataaactcaaatatgtcaatccaaaca 50  Q
    |||||||||||||||||||||||||||||||    
T  31811673 gtagataaactcaaatatgtcaatccaaaca 31811643  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 3738211 - 3738247
Alignment:
Q  9 tgcttatgcttgtagataaactcaaatatgtcaatcc 45  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  3738211 tgcttatgctagtagataaactcaaataagtcaatcc 3738247  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 29045893 - 29045851
Alignment:
Q  9 tgcttatgcttgtagataaactcaaatatgtcaatccaaacaa 51  Q
    |||| ||||| ||||||||||||||||| ||||||||||||||    
T  29045893 tgctcatgctagtagataaactcaaataagtcaatccaaacaa 29045851  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 172522 - 172489
Alignment:
Q  20 gtagataaactcaaatatgtcaatccaaacaagc 53  Q
    ||||||||||||||||| ||||||||||||||||    
T  172522 gtagataaactcaaataagtcaatccaaacaagc 172489  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 30014035 - 30013998
Alignment:
Q  13 tatgcttgtagataaactcaaatatgtcaatccaaaca 50  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  30014035 tatgctagtagataaactcaaataagtcaatccaaaca 30013998  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 4001691 - 4001735
Alignment:
Q  3 cacagatgcttatgcttgtagataaactcaaatatgtcaatccaa 47  Q
    |||| ||||||||| | ||||||||||||||||||||| ||||||    
T  4001691 cacaaatgcttatgttagtagataaactcaaatatgtcgatccaa 4001735  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 15370289 - 15370237
Alignment:
Q  3 cacagatgcttatgcttgtagataaactcaaatatgtcaatccaaacaagcct 55  Q
    |||| ||||||||||  |||||||| |||||||| ||||||||||||| ||||    
T  15370289 cacaaatgcttatgccagtagataagctcaaataagtcaatccaaacaggcct 15370237  T

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