View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2926_low_62 (Length: 257)
Name: NF2926_low_62
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2926_low_62 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 15849860 - 15849604
Alignment:
| Q |
1 |
tttgatgctgaaaaagggggccaagcgcatcgtcatgaattcaacaaggaggtttatggcccagtcttagtcgaggtatacatatatatgtttaaattat |
100 |
Q |
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| T |
15849860 |
tttgaagctgaaaaatgggtccaagagcatcgtcatgaattccacaaggaggtttatggcccagttttagttgaggtatacatatatatgtttaaatcat |
15849761 |
T |
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| Q |
101 |
tatgttttcatagcctttttgtcttcctacatggtccgttaaattgttgattgaattgacaggtaaatgtcccagatcagtctcatgctaaatatctaga |
200 |
Q |
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| T |
15849760 |
tatgttttcatagccttttggtcttcctacttggtccgttaaattgtcgattgaattgataggtaaatgtcccagatcagtctcatgctaaatatctaga |
15849661 |
T |
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| Q |
201 |
gggtcaagttgcttggtacacttggaaggtagtcctagacattttagtactcattct |
257 |
Q |
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| T |
15849660 |
gggtcaacttgcttggtacacttggaaggtagtcctagatatcttagtactcattct |
15849604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 4 - 246
Target Start/End: Original strand, 10699760 - 10699993
Alignment:
| Q |
4 |
gatgctgaaaaagggggccaagcgcatcgtcatgaattcaacaaggaggtttatggcccagtcttagtcgaggtatacatatatatgtttaaattattat |
103 |
Q |
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| T |
10699760 |
gatgcttataaatgggtccaagagcatcgcgatgaattccacaaggaggtttatggcccagttttagttgaggtata------tatgtcaaaagcat--- |
10699850 |
T |
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| Q |
104 |
gttttcatagcctttttgtcttcctacatggtccgttaaattgttgattgaattgacaggtaaatgtcccagatcagtctcatgctaaatatctagaggg |
203 |
Q |
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| T |
10699851 |
gtttttatagccttttggtcttcttacttggtctgttaaattgttgagtgaatttacaggtgaatgtctcagatcaatctcatgctggatatctagaggg |
10699950 |
T |
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| Q |
204 |
tcaagttgcttggtacacttggaaggtagtcctagacatttta |
246 |
Q |
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| T |
10699951 |
tcaagttgcttggtacacttggaaggtagtcctagatatttta |
10699993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 154 - 246
Target Start/End: Original strand, 47438660 - 47438752
Alignment:
| Q |
154 |
aattgacaggtaaatgtcccagatcagtctcatgctaaatatctagagggtcaagttgcttggtacacttggaaggtagtcctagacatttta |
246 |
Q |
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| T |
47438660 |
aatttacaggtgaatgtctcggatcaatctcatgctggatatctagagggtcaagttgcttggtacacttggaaggtagtcctagatatttta |
47438752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 47438513 - 47438592
Alignment:
| Q |
1 |
tttgatgctgaaaaagggggccaagcgcatcgtcatgaattcaacaaggaggtttatggcccagtcttagtcgaggtata |
80 |
Q |
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| T |
47438513 |
tttgatgcttataaatgggtccaagagcatcggaatgaattccacaaggaggtgtatggcccagttttagttgaggtata |
47438592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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