View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2926_low_63 (Length: 256)
Name: NF2926_low_63
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2926_low_63 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 13413008 - 13412787
Alignment:
| Q |
18 |
aattagtacatcgcctaacaaagaaaaggaagcaatagaacacttgggagctgattcatttctgataagtagtgacccaaagcagattcaggtaccatac |
117 |
Q |
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| T |
13413008 |
aattagtacatcgcctaacaaagaaaaggaagcaatagaacacttaggagctgattcatttctgataagtagtgacccaaagcagattcaggtgccatac |
13412909 |
T |
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| Q |
118 |
aatatgtgattcatttgattttgagatgcattatttcagaaatcgacaattataatttataaacacatattattgataaatttttagggtgcaattggta |
217 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
13412908 |
aatatatgattcatttgattttgagatgcattatttcagaaatcgacaattataatttataaacac--attattgataaatttttagggtgcaattggta |
13412811 |
T |
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| Q |
218 |
ctttggatggtattattgacacag |
241 |
Q |
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|||||||||||||||||||||||| |
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| T |
13412810 |
ctttggatggtattattgacacag |
13412787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 13385573 - 13385649
Alignment:
| Q |
18 |
aattagtacatcgcctaacaaagaaaaggaagcaatagaacacttgggagctgattcatttctgataagtagtgacc |
94 |
Q |
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| T |
13385573 |
aattagtacatctgctagcaaagaaaaggaagcaaaagaacacttaggagctgattcatttctgataagtcgtgacc |
13385649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 13419353 - 13419291
Alignment:
| Q |
18 |
aattagtacatcgcctaacaaagaaaaggaagcaatagaacacttgggagctgattcatttct |
80 |
Q |
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| T |
13419353 |
aattagtacatcgcctcacaaagaaaaggaagcaatagaacacttgggagctgactcgtttct |
13419291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 13389395 - 13389470
Alignment:
| Q |
19 |
attagtacatcgcctaacaaagaaaaggaagcaatagaacacttgggagctgattcatttctgataagtagtgacc |
94 |
Q |
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| T |
13389395 |
attagtacatcacccaacaaagagaaagaagcaatagaacacttaggagccgattcatttctgataagtcgtgacc |
13389470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 13426244 - 13426182
Alignment:
| Q |
18 |
aattagtacatcgcctaacaaagaaaaggaagcaatagaacacttgggagctgattcatttct |
80 |
Q |
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| T |
13426244 |
aattagtacatcgcctagcaaagaaaaggaagcgatagaacatttaggagctgactcgtttct |
13426182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 13453857 - 13453771
Alignment:
| Q |
18 |
aattagtacatcgcctaacaaagaaaaggaagcaatagaacacttgggagctgattcatttctgataagtagtgacccaaagcagat |
104 |
Q |
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|||||||||||| ||||| || |||||||||||| |||||||||| |||| || |||||||| ||||| |||| ||||||||||| |
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| T |
13453857 |
aattagtacatcacctaaaaaggaaaaggaagcattagaacacttacgagcggactcatttctaataagccgtgatccaaagcagat |
13453771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 13393801 - 13393870
Alignment:
| Q |
18 |
aattagtacatcgcctaacaaagaaaaggaagcaatagaacacttgggagctgattcatttctgataagt |
87 |
Q |
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|||||||||||| || |||||||| || |||||||||||| || | ||||||||||||||||| |||||| |
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| T |
13393801 |
aattagtacatcacccaacaaagagaaagaagcaatagaaaacctaggagctgattcatttcttataagt |
13393870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 13446904 - 13446854
Alignment:
| Q |
18 |
aattagtacatcgcctaacaaagaaaaggaagcaatagaacacttgggagc |
68 |
Q |
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||||||||| |||||||| || ||||||||||||||||||||||| ||||| |
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| T |
13446904 |
aattagtacgtcgcctaaaaaggaaaaggaagcaatagaacacttaggagc |
13446854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 47601175 - 47601099
Alignment:
| Q |
18 |
aattagtacatcgcctaacaaagaaaaggaagcaatagaacacttgggagctgattcatttctgataagtagtgacc |
94 |
Q |
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|||||||||||| |||||||||||||| ||||||| |||| ||| |||||||| |||||| |||||||| |||||| |
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| T |
47601175 |
aattagtacatcacctaacaaagaaaaagaagcaagagaatgcttaggagctgactcatttttgataagtcgtgacc |
47601099 |
T |
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