View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2926_low_65 (Length: 252)
Name: NF2926_low_65
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2926_low_65 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 29206101 - 29206342
Alignment:
| Q |
11 |
cataggggttcttggaggtggttcagagtccagatcagtgacagtggacttgacccgaacataggaaaaattattttcccatggtgattaatagtactca |
110 |
Q |
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| T |
29206101 |
cataggggttcttggaggtggttcagagtccagatcagtgacagtggacttgacccgaacataggaaaaattattttcctatggtgattaatagtactca |
29206200 |
T |
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| Q |
111 |
acataggaaaataatttaatttaatttaatataattgactatgttatgtcttctaagtaaaataagatgacaacttttccacctttttaccaattcaact |
210 |
Q |
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| T |
29206201 |
acataggaaaataatttaatttaatttaatataattgactatgttatgtcttctaagtaaaataagatgacaacttttccacctttttaccaattcaact |
29206300 |
T |
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| Q |
211 |
ggttctccactggtcaaactggcagatccagtttacaaacac |
252 |
Q |
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| T |
29206301 |
ggttctccactggtcaaactggcagatccagtttacaaacac |
29206342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 12645774 - 12645519
Alignment:
| Q |
11 |
cataggggttcttggaggtggttcagagtccagatcagtgacagtggacttgacccgaacataggaaaaattattttcccatggtgattaatagtactca |
110 |
Q |
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|||||||||||||| |||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
12645774 |
cataggggttcttgaaggtggttcaaagtccagatcagtgacagtggacttgatctgaacataggaaaaattattttcctacggtgattaatagtactca |
12645675 |
T |
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| Q |
111 |
acataggaaaataatttaatttaatttaatataattgactatgttatgtcttctaagtaaaataag----------------------atgacaactttt |
188 |
Q |
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| T |
12645674 |
acataggaaaataat-----ttaaattaatataattgactatgttatgtcttctaagtaaaataagatgataaataatatgaaaaataatgacaactttt |
12645580 |
T |
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| Q |
189 |
ccacctttttaccaattcaactggttctccactggtcaaactggcagatccagtttacaaa |
249 |
Q |
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| T |
12645579 |
ccacctttttaccaattcaactggttctccactggtcaaactggcagatccagtttacaaa |
12645519 |
T |
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