View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2926_low_69 (Length: 249)

Name: NF2926_low_69

Description: NF2926

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF2926_low_69

[»] chr5 (2 HSPs)

Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 2)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 206; E-Value: 1e-113

Query Start/End: Original strand, 12 - 249

Target Start/End: Original strand, 36651105 - 36651342

Alignment:

Q	12	aagaatcaacaacaatgctattcttcatcaagtagtccaccttatcaacaaagttcttgtatttaaccttcacacaagtgttatcattggatccacactc	111	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	36651105	aagaatcaacaacaatgttattcttcatcaagtagtccaccttatcaccaaagttcttgtatttaaccttcacacaagtgatatcattgcatccacactc	36651204	T

Q	112	caccacattagacacaaccgccaagctataactcataaccattagatatcccttgaggaacacatgttacatgtcagttttaacgaggagacgctgatgt	211	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36651205	caccacattagacgcaactgccaagctataactcataaccattagatatcccttgaggaacacatgtttcatgtcggttttaacgaggagacgctgatgt	36651304	T

Q	212	atgtaattcaattcagcctcatacaccccatttacact	249	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36651305	atgtaattcaattcagcctcatacaccccatttacact	36651342	T

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Target: chr5; HSP #2

Raw Score: 37; E-Value: 0.000000000006

Query Start/End: Original strand, 138 - 214

Target Start/End: Complemental strand, 36642257 - 36642181

Alignment:

Q	138	tataactcataaccattagatatcccttgaggaacacatgttacatgtcagttttaacgaggagacgctgatgtatg	214	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\| \| \|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	36642257	tataactcataaccatgagatatcctttgaggaacacatgcctcatgttaggtctagcgaggagacgctaatgtatg	36642181	T

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