View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2926_low_7 (Length: 604)
Name: NF2926_low_7
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2926_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 460; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 94 - 600
Target Start/End: Original strand, 33775869 - 33776376
Alignment:
| Q |
94 |
tcaaaagcatattatagagaactttctcctattgttcctattttattattaaaattcactaaacaactcttataagagatgctcttaggagtaacgattt |
193 |
Q |
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| T |
33775869 |
tcaaaagtatattatagagaactttctcctattgttcctattttattattaaagttaactaaacaactcttataagagatgctcttaggagtaacgattt |
33775968 |
T |
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| Q |
194 |
cataagccaagcagccaatattgaaattctcataatttgtgggaagtgtatggaccaccatctaactcagtcatctctgatttcatatatatacacaatt |
293 |
Q |
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| T |
33775969 |
cataagccaagcagccaatattgaaattctcatcatttgtgggaagtgtatggaccaccatctaactcagtcatctctgatttcatatatatacacaatt |
33776068 |
T |
|
| Q |
294 |
ttgacctgtttaacggaataaatcctatctcgactgcactgtaatacatgcaag-aagtcaagttcaaaaatatatagtctatctataaattttatgaac |
392 |
Q |
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| T |
33776069 |
ttgacctgtttaacggaataaatcctatctcgactgcattgcaatacatgcaagtaagtcaagttcaaaaatatattgtctatctataaattttatgaac |
33776168 |
T |
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| Q |
393 |
aatcacattgtgtaatggctacaggagagttgataatgttgcctaacatacatgaatttccgagggatacaacatatacacatatacaatcagcttcttc |
492 |
Q |
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| T |
33776169 |
aatcacattgtgtaatggctacaggagagttgataatgttgcctaacatacatgaatttccgagggatacaacatatacacatatacaatcagcttcttc |
33776268 |
T |
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| Q |
493 |
gatattctgcattataaatctatgtccaaaccaaattaaggtccagcgcaccgtgaacttcactccattataacaatcctttttatcacacatctcttca |
592 |
Q |
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| T |
33776269 |
gatattctgcattataaatctatgtccaaaccaaattaaggtccagcgcaccgtgaacttcactccattataacaatcttttttatcacacatctcttct |
33776368 |
T |
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| Q |
593 |
tctcactc |
600 |
Q |
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| T |
33776369 |
tttcactc |
33776376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 33775742 - 33775814
Alignment:
| Q |
19 |
cctaattcacaaatacttgtcatctttgaaatactctcaactacttcatctcatattctctccacctttatac |
91 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33775742 |
cctaattcacaaatacttgtcatctttgaaatactctcaactacttcatctcatattctctccacctttatac |
33775814 |
T |
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