View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2926_low_77 (Length: 241)
Name: NF2926_low_77
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2926_low_77 |
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Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 13 - 240
Target Start/End: Complemental strand, 15850123 - 15849893
Alignment:
| Q |
13 |
ttgtggagttggaaatttctgctaatgaagtgggagagaataagtcactagcagaaaaattaatcaaacgtaaaaatttctccttgaagaattgcaaaga |
112 |
Q |
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| T |
15850123 |
ttgtggagtcggaaagttctgctaatcaagtgggagaaaataagtcactatcagaaaaactaattaaacgaaaaaacttctccttgaagaattgtaaaga |
15850024 |
T |
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| Q |
113 |
caggtagaagttggacaaaagatggtgttt---ttcttcagattggttacttgtgtcaatctattgtttaattctctattgtaaaatttgcaggttgaag |
209 |
Q |
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| T |
15850023 |
caggtagaagttggacaaaagttgttttttttcttcttcagattggttacttgtgttaatctattgtttaattctctattgtaaaatttgcaggttgaag |
15849924 |
T |
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| Q |
210 |
gaaatgagtnnnnnnngttacaagtgtttac |
240 |
Q |
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| T |
15849923 |
gaaatgagtaaaaaaagttacaagtgtttac |
15849893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 216
Target Start/End: Original strand, 47438257 - 47438456
Alignment:
| Q |
16 |
tggagttggaaatttctgctaatgaagtgggagagaataagtcactagcagaaaaattaatcaaacgtaaaaatttctccttgaagaattgcaaagacag |
115 |
Q |
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| T |
47438257 |
tggagttggatgattctgctaatcaagcgagacagaataagtcacaagcagaaagcgaaataaagcaaaaaaagttctccttaacgaagtgtaaagagag |
47438356 |
T |
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| Q |
116 |
gtagaagttggacaaaagatggtgtttttcttcagattggttacttgtgtcaatctattgtttaattctctattgtaaaatttgcaggttgaaggaaatg |
215 |
Q |
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| T |
47438357 |
gtagaagatgggcacaagatgatgtttt-cttcagattggttacttttgcgaatatattgtttaattctctattgtaaaatttgcaggttgaaggaaatg |
47438455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 216
Target Start/End: Original strand, 10699498 - 10699700
Alignment:
| Q |
13 |
ttgtggagttggaaatttctgctaatgaagtgggagagaataagtcactagcagaaaaattaatcaaacgtaaaaatttctccttgaagaattgcaaaga |
112 |
Q |
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||||||||||||| ||||||||| ||| | || |||||||||||| |||||||| ||| || | |||||| |||||||| | || || ||||| |
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| T |
10699498 |
ttgtggagttggattattctgctaaccaagcgagacagaataagtcacaagcagaaagcgaaataaagcataaaaagttctccttaattaagtgtaaaga |
10699597 |
T |
|
| Q |
113 |
caggtagaagttggacaaaagatggtgtttttcttcagattggttacttgtgtcaatctattgtttaattctctattgtaaaatttgcaggttgaaggaa |
212 |
Q |
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||||||||||||| ||||| | | | |||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
10699598 |
gaggtagaagttgggcaaaata-agaggttttcttcagattgcttacttgtgtgaatatattgtttaattctctattgtaaaatttgcaggttgatggaa |
10699696 |
T |
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| Q |
213 |
atga |
216 |
Q |
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|||| |
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| T |
10699697 |
atga |
10699700 |
T |
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