View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2926_low_82 (Length: 239)
Name: NF2926_low_82
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2926_low_82 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 51706300 - 51706093
Alignment:
| Q |
1 |
tttctctttatcccctcggacacggaaattatacccctacaatttata--aaaaataaatcaatattaacatttttgtcatttaacttcttacacaannn |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
51706300 |
tttctctttatcccctcggacacggaaattatacccctacaatttataataaaaataaatcaatattagcatttttgtcatttaacttcttacacaattt |
51706201 |
T |
|
| Q |
99 |
nnnnctacccttactttcaacgtttctgaattcagagttcacccccacaa-nnnnnnncttcatttccctgcatttgtactttcaaaatttgggagatgt |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51706200 |
ttttctacccttactttcaacgtttctgaattcagagttcacccccacaattttttttcttcatttccctgcatttgtactttcaaaatttgggagatgt |
51706101 |
T |
|
| Q |
198 |
gaataccc |
205 |
Q |
| |
|
|||||||| |
|
|
| T |
51706100 |
gaataccc |
51706093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University