View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2926_low_86 (Length: 237)
Name: NF2926_low_86
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2926_low_86 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 6 - 237
Target Start/End: Original strand, 34819455 - 34819686
Alignment:
| Q |
6 |
attgttattaagctccaagcacttggcttcaacatctcgcttatcttcctcgactttctttttctcatcctttgtcgtctttaaggagttgcgagattcc |
105 |
Q |
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| T |
34819455 |
attgttattaagctccaagcacttggcttcaacatctcgcttatcttcctcgactttctttttctcatcctttgtcgtctttaaggagttgcgagattcc |
34819554 |
T |
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| Q |
106 |
ttcaactggtcctccaaggttttaacccttaacttcaagtcttcgttctcctgctttagcctatctgcattcgattttacagcctgaaacttttcctcca |
205 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34819555 |
ttcaactggtcctccaaggttttaaccctcaacttcaagtcttcgttctcctgctttagcctatctgcattcgattttacagcctgaaacttttcctcca |
34819654 |
T |
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| Q |
206 |
tcacttcaagcaacaccacagagcgcaaacaa |
237 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
34819655 |
tcacttcaagcaacaccacagagcgcaaacaa |
34819686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 22080589 - 22080633
Alignment:
| Q |
177 |
cgattttacagcctgaaacttttcctccatcacttcaagcaacac |
221 |
Q |
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| T |
22080589 |
cgattttacagcctaaaaatcttcctccatcacttcaagcaacac |
22080633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 22080430 - 22080561
Alignment:
| Q |
1 |
tcatcattgttattaagctccaagcacttggcttcaacatctcgcttatcttcctcgactttctttttctcatcctttgtcgtctttaaggagttgcgag |
100 |
Q |
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|||| ||||||||||||||| || ||| |||||| |||| ||||||| |||| |||||||| ||||||| | | | ||||||||||| |||| || |
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| T |
22080430 |
tcataattgttattaagctctaacagcttagcttcagcatcccgcttattctcctaaactttcttcttctcatacctcgctgtctttaaggaattgccag |
22080529 |
T |
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| Q |
101 |
attccttcaactggtcctccaaggttttaacc |
132 |
Q |
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| T |
22080530 |
aatccttcaactaatcctctaaggatttaacc |
22080561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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